LoRDEC: a hybrid error correction program for long, PacBio reads



http://www.atgc-montpellier.fr/lordec/

L. Salmela and E. Rivals

LoRDEC: accurate and efficient long read error correction

Bioinformatics 30(24):3506-3514, 2014, doi: 10.1093/bioinformatics/btu538.

Source code

We provide the source code, which is available in the following archive

• package: LoRDEC-0.5.tar.gz

To compile it you will need to fetch the GATB core library (see below).

Installation

Please consult the README file (text format) available in the source archive.
LoRDEC needs the GATB core library (currently in version gatb-core-1.0.5-Linux.tar.gz)

• Dependencies : GATB library
  
• GATB library website: http://gatb-core.gforge.inria.fr/
  
• GATB core library repository: http://gatb-core.gforge.inria.fr/
  

For installing, please download, go in the desired directory, and in a shell type:

• tar xzvf LoRDEC-0.4.1.tar.gz
  
• make