TypeError: __new__() missing 1 required positional argument: ‘is_raw‘

问题1：TypeError: new() missing 1 required positional argument: ‘is_raw’

Traceback (most recent call last):
  File "Dicom_2_Png.py", line 75, in <module>
    slices = load_patient(dicom_dir)
  File "Dicom_2_Png.py", line 37, in load_patient
    instance = pydicom.dcmread(src_dir + '/' + s)
  File "/home/USER/anaconda2/envs/Pulmonary-Nodule-Detection-Based-on-Deep-Learning/lib/python3.6/site-packages/pydicom/filereader.py", line 888, in dcmread
    force=force, specific_tags=specific_tags)
  File "/home/USER/anaconda2/envs/Pulmonary-Nodule-Detection-Based-on-Deep-Learning/lib/python3.6/site-packages/pydicom/filereader.py", line 672, in read_partial
    file_meta_dataset = _read_file_meta_info(fileobj)
  File "/home/USER/anaconda2/envs/Pulmonary-Nodule-Detection-Based-on-Deep-Learning/lib/python3.6/site-packages/pydicom/filereader.py", line 524, in _read_file_meta_info
    stop_when=_not_group_0002
  File "/home/USER/anaconda2/envs/Pulmonary-Nodule-Detection-Based-on-Deep-Learning/lib/python3.6/site-packages/pydicom/filereader.py", line 359, in read_dataset
    raw_data_element = next(de_gen)
  File "/home/USER/anaconda2/envs/Pulmonary-Nodule-Detection-Based-on-Deep-Learning/lib/python3.6/site-packages/pydicom/filereader.py", line 206, in data_element_generator
    is_implicit_VR, is_little_endian)
TypeError: __new__() missing 1 required positional argument: 'is_raw'

最好的解决方式(亲测有用)：
        我的服务器上的conda环境下的python版本是3.6.0，更换为3.6.1就成功解决了问题。

问题2：ImportError: /data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/torch/lib/libtorch_python.so: undefined symbol: PySlice_Unpack

Traceback (most recent call last):
  File "run.py", line 3, in <module>
    from simclr import SimCLR
  File "/data/Project/luanhaijing/MSI-MIL/extract_simCLR_feature/simclr/simclr.py", line 3, in <module>
    import torch
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/torch/__init__.py", line 189, in <module>
    from torch._C import *
ImportError: /data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/torch/lib/libtorch_python.so: undefined symbol: PySlice_Unpack

解决方法：将python版本更新到3.6.2

问题3：No module named ‘tensorboard’
解决方案：pip install tensorboard

问题4：No module named ‘yaml’
解决方案：pip install pyyaml

问题4：opencv-python的安装问题，最好参考链接（python与opencv版本的对应关系来进行库的安装）

(simclr) [luanhaijing@gpu02 simclr]$ python3 -m pip install opencv-python
Looking in indexes: https://pypi.tuna.tsinghua.edu.cn/simple
Collecting opencv-python
  Using cached https://pypi.tuna.tsinghua.edu.cn/packages/fa/1d/990ad4eb4d385fabb2773170cf865977b6d5b558dd51459672f7cf7d1847/opencv-python-4.8.0.74.tar.gz (92.1 MB)
  ERROR: Error expected str, bytes or os.PathLike object, not NoneType while executing command /data/luanhaijing/software/anaconda3/envs/simclr/bin/python3 /data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-ig5gmi02/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.tuna.tsinghua.edu.cn/simple --trusted-host https --trusted-host '' --trusted-host trusted-host -- 'cmake>=3.1' 'numpy==1.13.3; python_version=='"'"'3.6'"'"' and platform_machine != '"'"'aarch64'"'"' and platform_machine != '"'"'arm64'"'"'' 'numpy==1.17.0; python_version=='"'"'3.7'"'"' and platform_machine != '"'"'aarch64'"'"' and platform_machine != '"'"'arm64'"'"'' 'numpy==1.17.5; python_version=='"'"'3.8'"'"' and platform_machine != '"'"'aarch64'"'"' and platform_machine != '"'"'arm64'"'"'' 'numpy==1.19.3; python_version<='"'"'3.9'"'"' and sys_platform == '"'"'linux'"'"' and platform_machine == '"'"'aarch64'"'"'' 'numpy==1.21.0; python_version<='"'"'3.9'"'"' and sys_platform == '"'"'darwin'"'"' and platform_machine == '"'"'arm64'"'"'' 'numpy==1.19.3; python_version=='"'"'3.9'"'"' and platform_machine != '"'"'aarch64'"'"' and platform_machine != '"'"'arm64'"'"'' 'numpy==1.21.2; python_version=='"'"'3.10'"'"' and platform_system!='"'"'Darwin'"'"'' 'numpy==1.21.4; python_version=='"'"'3.10'"'"' and platform_system=='"'"'Darwin'"'"'' 'numpy==1.22.2; python_version>='"'"'3.11'"'"'' pip 'scikit-build>=0.14.0' setuptools==59.2.0
  Installing build dependencies ... error
ERROR: Exception:
Traceback (most recent call last):
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/cli/base_command.py", line 186, in _main
    status = self.run(options, args)
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/commands/install.py", line 331, in run
    resolver.resolve(requirement_set)
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/legacy_resolve.py", line 177, in resolve
    discovered_reqs.extend(self._resolve_one(requirement_set, req))
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/legacy_resolve.py", line 333, in _resolve_one
    abstract_dist = self._get_abstract_dist_for(req_to_install)
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/legacy_resolve.py", line 282, in _get_abstract_dist_for
    abstract_dist = self.preparer.prepare_linked_requirement(req)
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/operations/prepare.py", line 516, in prepare_linked_requirement
    req, self.req_tracker, self.finder, self.build_isolation,
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/operations/prepare.py", line 95, in _get_prepared_distribution
    abstract_dist.prepare_distribution_metadata(finder, build_isolation)
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/distributions/sdist.py", line 38, in prepare_distribution_metadata
    self._setup_isolation(finder)
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/distributions/sdist.py", line 68, in _setup_isolation
    "Installing build dependencies"
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/build_env.py", line 201, in install_requirements
    call_subprocess(args, spinner=spinner)
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/pip/_internal/utils/subprocess.py", line 190, in call_subprocess
    stdout=subprocess.PIPE, cwd=cwd, env=env,
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/subprocess.py", line 707, in __init__
    restore_signals, start_new_session)
  File "/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/subprocess.py", line 1267, in _execute_child
    restore_signals, start_new_session, preexec_fn)
TypeError: expected str, bytes or os.PathLike object, not NoneType

问题5：No module named ‘skimage‘
解决办法：pip install scikit-image

问题6：模型的cuda版本与显卡版本之间的关系：

Please install apex for mixed precision training from: https://github.com/NVIDIA/apex
Running on: cuda
/data/luanhaijing/software/anaconda3/envs/simclr/lib/python3.6/site-packages/torch/cuda/__init__.py:125: UserWarning:
NVIDIA A800 80GB PCIe with CUDA capability sm_80 is not compatible with the current PyTorch installation.
The current PyTorch install supports CUDA capabilities sm_37 sm_50 sm_60 sm_61 sm_70 sm_75 compute_37.
If you want to use the NVIDIA A800 80GB PCIe GPU with PyTorch, please check the instructions at https://pytorch.org/get-started/locally/

问题6：AttributeError: module ‘numpy’ has no attribute ‘object’.
np.object was a deprecated alias for the builtin object. To avoid this error in existing code, use object by itself. Doing this will not modify any behavior and is safe.
The aliases was originally deprecated in NumPy 1.20; for more details and guidance see the original release note at:
https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations

解决方法：pip install numpy==1.19.5

问题7：-bash: git: command not found

解决方法：conda install git

问题8：如何安装apex
错误1：

(msi-mil) [luanhaijing@gpu02 apex]$ python setup.py install --cuda_ext


torch.__version__  = 2.0.1


Traceback (most recent call last):
  File "/data/Project/luanhaijing/MSI-MIL/extract_swav_feature/apex/setup.py", line 137, in <module>
    _, bare_metal_version = get_cuda_bare_metal_version(CUDA_HOME)
  File "/data/Project/luanhaijing/MSI-MIL/extract_swav_feature/apex/setup.py", line 24, in get_cuda_bare_metal_version
    raw_output = subprocess.check_output([cuda_dir + "/bin/nvcc", "-V"], universal_newlines=True)
TypeError: unsupported operand type(s) for +: 'NoneType' and 'str'

解决方案： conda install -c nvidia cuda-nvcc

错误2：通过python setup.py install --cuda_ext命令进行apex的安装时，报错：

(SwAV) [luanhaijing@gpu02 apex]$ python setup.py install --cuda_ext


torch.__version__  = 1.4.0



Compiling cuda extensions with
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2023 NVIDIA Corporation
Built on Tue_Jul_11_02:20:44_PDT_2023
Cuda compilation tools, release 12.2, V12.2.128
Build cuda_12.2.r12.2/compiler.33053471_0
from /data/luanhaijing/software/anaconda3/envs/SwAV/bin

Traceback (most recent call last):
  File "setup.py", line 178, in <module>
    check_cuda_torch_binary_vs_bare_metal(CUDA_HOME)
  File "setup.py", line 44, in check_cuda_torch_binary_vs_bare_metal
    + "In some cases, a minor-version mismatch will not cause later errors:  "
RuntimeError: Cuda extensions are being compiled with a version of Cuda that does not match the version used to compile Pytorch binaries.  Pytorch binaries were compiled with Cuda 10.1.
In some cases, a minor-version mismatch will not cause later errors:  https://github.com/NVIDIA/apex/pull/323#discussion_r287021798.  You can try commenting out this check (at your own risk).

根据错误的提醒，需要查看这个链接中所对应的处理https://github.com/NVIDIA/apex/pull/323#discussion_r287021798，具体的处理方案为，更换运行命令后，成功解决了我的问题：python setup.py install

问题9：在使用conda来进行包的安装时会出现错误提示。

(SWAV) [luanhaijing@gpu02 apex]$ conda install pytorch==1.9.0 torchvision==0.10.0 cudatoolkit=11.1 -c pytorch -n SWAV
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

  - cudatoolkit=11.1

Current channels:

  - https://conda.anaconda.org/pytorch/linux-64
  - https://conda.anaconda.org/pytorch/noarch
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/linux-64
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/noarch
  - http://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/linux-64
  - http://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/noarch
  - https://repo.anaconda.com/pkgs/main/linux-64
  - https://repo.anaconda.com/pkgs/main/noarch
  - https://repo.anaconda.com/pkgs/r/linux-64
  - https://repo.anaconda.com/pkgs/r/noarch

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.

解决放在在错误提示中，具体详见该博客参考，并且使用该命令完成了安装工作： conda install -c dglteam dgl-cuda11.1

问题10：
错误：RuntimeError: NCCL error in: /pytorch/torch/lib/c10d/ProcessGroupNCCL.cpp:31, unhandled cuda error, NCCL version 2.7.8 work = _default_pg.barrier() RuntimeError: NCCL error in: /pytorch/torch/lib/c10d/ProcessGroupNCCL.cpp:31, unhandled cuda error, NCCL version 2.7.8 ，解决方法pip3 install torch==1.8.1+cu111 torchvision==0.9.1+cu111 -f https://download.pytorch.org/whl/torch_stable.html ，详见参考链接