Coursera Getting and Cleaning Data Week2学习笔记Reading from HDF5

HDF5 被用来存储大型数据集，也被用来存储结构化的数据集 ，同时也支持存储不同类型的数据 ，HDF 是 Hierarchical Data Format (层次型数据格式) 的缩写 取这个名字是因为 它以群组 (group) 的形式来存储零个或多个数据集以及它们的元数据 ，每个群组都有一个表头，包括群组名称和对应的属性列表 ，同时还有一个群组符号表 (symbol table) 里面列出了组里的对象。来自 <https://www.coursera.org/learn/data-cleaning/lecture/q7OsM/reading-from-hdf5>

rhdf5Package安装方法：

source("https://bioconductor.org/install/")

if (!requireNamespace("BiocManager", quietly = TRUE))

  install.packages("BiocManager")

BiocManager::install()

BiocManager::install("rhdf5")

 

library(rhdf5)

created=h5createFile("example.h5")

created

建立h5文件

建立group（二次打开，建立了example1.h5文件

created=h5createGroup("example1.h5","foo") 在example1中建立名为“foo”的群组

created=h5createGroup("example1.h5","baa")

created=h5createGroup("example1.h5","foo/foobaa")foo的子组foobaa

h5ls("example1.h5")

 

写入组

A=matrix(1:10,nr=5,nc=2)

h5write(A,"example1.h5","foo/A")

B=array(seq(0.1,2.0,by=0.1),dim=c(5,2,2))

attr(B,"scale")<-"liter"

h5write(B,"example1.h5","foo/foobaa/B")

h5ls("example1.h5")

 

写一个数据集

 

df=data.frame(1L:5L,seq(0,1,length.out=5),

              c("ab","cde","fghi","a","s"),stringsAsFactors = FALSE)

h5write(df,"example1.h5","df")

h5ls("example1.h5")

 

读取数据

readA=h5read("example1.h5","foo/A")

readB=h5read("example1.h5","foo/foobaa/B")

readdf=h5read("example1.h5","df")

readA

 

h5write(c(12,13,14),"example1.h5","foo/A",index=list(1:3,1))

h5read("example1.h5","foo/A")

写入数据，将12，13，14，写入example1.h5的foo/A中，索引为第一列的前三行