#!/bin/bash
#
#$ -cwd
#$ -S /bin/bash
#$ -l p=10
cd /data/zhangyong/yyp/yypold/hic/hdf5-build/examples
export PATH=$PATH:~/miniconda3/envs/hic37/bin
export PATH=$PATH:~/miniconda3/envs/hic37/bin
fanc auto SRR4271982_chr18_19_1.fastq.gzip SRR4271982_chr18_19_2.fastq.gzip \
./example_output/ -i bwa-index/hg19_chr18_19.fa \
-g hg19_chr18_19_re_fragments.bed