安装coopup

conda env list
109 pip install https://github.com/open2c/coolpuppy/archive/master.zip
110 pip install Cython
111 pip install https://github.com/open2c/coolpuppy/archive/master.zip
112 pip install numpy
113 pip install https://github.com/open2c/coolpuppy/archive/master.zip
114 pip install https://github.com/mirnylab/cooltools/archive/master.zip
115 pip install gcc
116 apt-get gcc
117 apt gcc
118 gcc
119 sudo apt install gcc
120 pip install https://github.com/open2c/coolpuppy/archive/master.zip
121 gcc
122 source
123 source ./bash
124 pip install https://github.com/open2c/coolpuppy/archive/master.zip
125 coolpup.py
126 history

ls
85 gcc
90 sudo apt install gcc
91 gcc
94 sudo apt-get install zlib1g-dev
95 cd …/…/
96 cd mnt
97 cd c
98 ls
99 cd Users/
100 ls
101 cd admin/
102 cd Desktop/
103 ls
104 cd coolpuppy-master
105 cd tests
106 ls
107 coolpup.py Scc1-control.10000.cool CH12_loops_Rao.bed --nshifts 10 --unbalanced --coverage_norm --mindist 100000 --outname Ctrl_loop.txt --log WARNING #Suppressing long default outputs
108 history
####有问题就从新安装一下
2016 pip install coolpup.py
2017 pip uninstall coolpuppy
2018 pip install coolpuppy
2019 pip install Cython
2020 pip install coolpuppy
2021 ls
2022 coolpup.py Scc1-control.10000.cool CH12_loops_Rao.bed --nshifts 10 --unbalanced --coverage_norm --mindist 100000 --outname Ctrl_loop.txt --log WARNING #Suppressing long default outputs
2023 plotpup.py Ctrl_loop.txt Scc1KO_loop.txt --row_names Control,Scc1KO --enrichment 3 --output loops.png
2024 plotpup.py Ctrl_loopyes.txt Scc1KO_loop.txt --row_names Control,Scc1KO --enrichment 3 --output loops.png
2025 plotpup.py Ctrl_loopyes.txt Scc1KO_loop.txt --row_names Con
2026 trol,Scc1KO --enrichment 3 --output loops.png
2027 plotpup.py Ctrl_loopyes.txt Ctrl_loop.txt --row_names Control,Scc1KO --enrichment 3 --output loopsyes.png
2028 history