安装HDF5 1.10.1
# 下载hdf5
$ wget http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src/hdf5-1.10.1.tar.gz
# 解压
$ tar -zxvf hdf5-1.10.1.tar.gz
# 进入文件夹
$ cd hdf5-1.10.1
# 编译并安装
$ ./configure --enable-cxx --prefix=<path to hdf5>/hdf5-1.10.1
$ make
$ make install
$ export PATH=<path to hdf5>/bin:${PATH}
$ export h5prefix=-prefix=<path to hdf5>
安装sonLib
# 下载sonLib
$ git clone https://github.com/ComparativeGenomicsToolkit/sonLib.git
# 安装
$ make
安装CLAPACK
# 下载clapack
$ wget http://www.netlib.org/clapack/clapack.tgz
# 解压
$ tar -xvzf clapack.tgz
$ cd clapack
$ cp make.inc.example make.inc
# 安装
$ make f2clib
$ make blaslib
$ make lib
$ export CLAPACKPATH=<path to clapack>
安装Phast
# 下载Phast
$ git clone https://github.com/CshlSiepelLab/phast.git
# 安装
$ cd phast/src
$ make
安装hal
下载:https://github.com/ComparativeGenomicsToolkit/hal
gcc版本4.2及以上
# 解压
$ unzip hal-master.zip
$ mv hal-master hal
$ cd hal
$ make
$ export PATH=<path to hal>/bin:${PATH}