Traceback (most recent call last):
File "/usr/local/bin/pvacseq", line 11, in <module>
sys.exit(main())
File "/usr/local/lib/python3.5/dist-packages/pvacseq/pvacseq.py", line 84, in main
args[0].func.main(args[1])
File "/usr/local/lib/python3.5/dist-packages/pvacseq/lib/main.py", line 285, in main
pipeline.execute()
File "/usr/local/lib/python3.5/dist-packages/pvacseq/lib/pipeline.py", line 255, in execute
self.generate_fasta(chunks)
File "/usr/local/lib/python3.5/dist-packages/pvacseq/lib/pipeline.py", line 331, in generate_fasta
lib.generate_fasta.main(generate_fasta_params)
File "/usr/local/lib/python3.5/dist-packages/pvacseq/lib/generate_fasta.py", line 103, in main
position = int(line['protein_position']) - 1
ValueError: invalid literal for int() with base 10: '774-775'
粗暴解决:
在vcf 文件中找到 蛋白位置774-775 的这一行(grep ‘774-775’ my.vcf