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RSS订阅原创 scikit-learn 梯度提升树(GBDT) 参数
1.scikit-learn GBDT类库概述 在sacikit-learn中，GradientBoostingClassifier为GBDT的分类类， 而GradientBoostingRegressor为GBDT的回归类。两者的参数类型完全相同，当然有些参数比如损失函数loss的可选择项并不相同。这些参数中，类似于Adaboost，我们把重要参数分为两类，第一类是Boosting框...
2020-02-09 13:34:52
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原创 scikit-learn Adaboost类库 参数说明
在集成学习之Adaboost算法原理小结中，我们对Adaboost的算法原理做了一个总结。这里我们就从实用的角度对scikit-learn中Adaboost类库的使用做一个小结，重点对调参的注意事项做一个总结。1. Adaboost类库概述 scikit-learn中Adaboost类库比较直接，就是AdaBoostClassifier和AdaBoostRegressor两个，...
2020-02-09 12:06:11
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转载 机器学习——决策树，DecisionTreeClassifier参数详解，决策树可视化查看树结构
sklearn中决策树算法参数共有13个，如下：classsklearn.tree.DecisionTreeClassifier(criterion=’gini’,splitter=’best’,max_depth=None,min_samples_split=2,min_samples_leaf=1,min_weight_fraction_leaf=0.0,max_featur...
2020-02-08 20:24:22
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原创 SVM简介及sklearn参数
NuSVCclass sklearn.svm.NuSVC(nu=0.5, kernel='rbf', degree=3, gamma='auto', coef0=0.0, shrinking=True, probability=False, tol=0.001, cache_size=200, class_weight=None, verbose=False, max_iter=-1, de...
2020-02-08 16:08:40
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转载 TCGA 临床数据 表型 phenotype 各列的含义
原文链接：http://www.cnblogs.com/emanlee/p/7635951.htmlProperty name Description kind The resource type. aliquots[] List of barcodes of aliquots taken from this participant. clinical_data...
2020-02-05 15:55:15
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原创 生物信息学入门 使用 RNAseq counts数据进行差异表达分析（DEG）——edgeR 算法 数据 代码 结果解读
差异表达分析通常作为根据基因表达矩阵进行生物信息学分析的第一步，有助于我们观察基因在不同样本中的表达差异，从而确定要研究的基因和表型之间的联系。常用的基因表达数据来自基因芯片或高通量测序。虽然矩阵看起来差不多，但是由于服从不同的分布，因此在进行差异表达的时候需要用不同的方法。对于一般的生命科学领域科研人员来说，了解晦涩的算法并没有太大价值。本文力求精简，从数据——算法——结果三个方面...
2019-03-25 09:17:58
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原创 生物信息学入门 GEO芯片数据差异表达分析时是否需要log2以及标准化的问题
GEO中的Series Matrix File(s)通常是经过了标准化和对数转换的数据。但不全是。在实际应用的时候需要根据情况判断一下。对于芯片数据，可能作者将.cel的文件处理成未标准化的数据直接上传。一般来说，在判断counts是否需要重新标准化以及是否需要log2时，可以根据数值大小粗略估计。如果表达丰度的数值在50以内，通常是经过log2转化的。如果数字在几百几千，则是未经转化的。因为...
2019-03-13 22:14:22
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原创 生物信息学入门 GEO芯片数据差异表达分析时需要log2处理的原因
首先借用一张图，通常使用limma处理时，需要经过log2后的矩阵作为表达矩阵输入。根据log2FC的定义，这个数字表示变化倍数经过log2后的一个值，比如log2FC=1,则变化为2倍；log2FC=2,则变化为4倍。这是常用的一种表述方法。在使用limma函数计算时，如果输入的矩阵没有经过log2处理，则会把FC当成log2FC输入，这或许是因为limma默认输入的是log2后的表达式...
2019-03-13 22:14:11
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原创 生物信息学入门 富集分析与蛋白质互作用网络（PPI）的可视化 Cystocape入门指南
网络图是生物信息学中常用的显示不同节点之间关联方向与关联程度的可视化方法。在富集分析中，网络图常被用于表示功能与估计到该功能的基因的联系。在蛋白质互作用网络中，网络图常用于表示编码基因之间的互作用类型与作用强度，基于这些信息，还可以通过某一节点与其他节点的连接数量来判断该节点在整个网络中的贡献度（degree）。绘制网络图常使用cystoscape软件，通过输入符合规范的数据，调整合适的参数，...
2019-03-01 10:16:08
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原创 2019年1-4月份雅思口语题库素材（原创）describe something you do to keep you concentrated
Badminton is my favorite sport. One of the reason why I like to do it is that it can help me to keep concentrated. Badminton is a kind of ball game. You have to catch the ball and hit it to a positi...
2019-02-01 14:13:10
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原创 2019年1-4月份雅思口语题库素材（原创）describe something given to you that you really need
In the next summer holiday, I thought I really need a new mobile phone. At that time, I was using iphone6. When I come to university, my parents brought me this Iphone. It had many functions. I can ...
2019-02-01 14:12:20
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原创 2019年1-4月份雅思口语题库素材（原创）describe a competition you want to take part in
Our school holds a badminton competition every year. All students in our school are able to take part in. when I was a freshman, I knew it from a post. Students who enter the top eight in the badmin...
2019-02-01 14:11:41
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原创 2019年1-4月份雅思口语题库素材（原创）describe someone you have not seen before but you would like to know more
I have been a medical student studying in Nantong university for three years. in the next term, I will become a senior student and meet Professor Wu. I knew him when I was a freshman. At the beginni...
2019-02-01 14:11:07
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原创 2019年1-4月份雅思口语题库素材（原创）describe the time when you received your first cellphone
When I was a child in the primary school, I always used my parents’ phone. After studying in the high school, I hoped to own a phone belonging to myself. However, my parents said I may use phone to ...
2019-02-01 14:10:30
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原创 2019年1-4月份雅思口语题库素材（原创）describe a time that you were shopping in a street market
On the north side of my school, there is a shopping street, where we can buy almost everything. Therefore, students like to shopping in this street at the weekend. One day, my best friend’s birthday...
2019-02-01 14:09:53
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原创 2019年1-4月份雅思口语题库素材（原创）describe a skill that took you a long time to learn
Badminton is my favorite sport. Although I know the basic skills, I need practice more to make progress. When I was a child, my father taught me how to play badminton. At that time, there is a small...
2019-02-01 14:09:15
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原创 2019年1-4月份雅思口语题库素材（原创）describe a time that you enjoyed your free time
In the last summer holiday, I had a travel in Qingdao city. Qingdao is located in the northern of China, not far away from my hometown. When I was a child, my father brought me to Qingdao for holida...
2019-02-01 14:08:40
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原创 2019年1-4月份雅思口语题库素材（原创）describe a time when you had some medicine
When I was in high school, I started to have fever and cough due to a bacterial infection. At the doctor's advice, I ate some antibiotics. They are very effective, after which the symptoms of fever ...
2019-01-30 00:47:36
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原创 2019年1-4月份雅思口语题库素材（原创） describe an item you bought but do not often use
When I was in middle school, I thought people who can play guitar is quite handsome. Therefore, I asked my mother if she can buy me a guitar and I promised to do efforts so that I can be skilled in ...
2019-01-30 00:47:10
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原创 2019年1-4月份雅思口语题库素材（原创）describe a stiutaion when you did not have enough time
About two year ago, it is my first time to left university and return home. I bought a train ticket. When I arrived at the train station and waited for train. suddenly, I realized that I could not fi...
2019-01-30 00:46:36
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原创 2019年1-4月份雅思口语题库素材（原创）describe a person you wantes to be similar to when you were growing up
I have been a medical student studying in Nantong university for three years. After the last summer holiday, I became a senior student and meet Professor Wu. Professor Wu focus on bioinformatics, a ...
2019-01-30 00:46:06
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原创 2019年1-4月份雅思口语题库素材（原创）describe something interesting that your friend has done but you have not
In the last summer holiday, my friends and I came to Qingdao city to go on a holiday. Qingdao is a sea-side city where there are many people to have fun on the beach. In the summer, sea water is sui...
2019-01-30 00:45:36
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原创 2019年1-4月份雅思口语题库素材（原创）describe a beautiful city
When it comes to the beautiful city in my mind, I must introduce Qingdao city to you, which is located in the Shandong province, not far away from my hometown. When I was a child, my father brought ...
2019-01-30 00:45:05
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原创 2019年1-4月份雅思口语题库素材（原创）describe an occasion when you helped a person
When I was in the middle school, I always come to the library in my school. It was located in the corner of campus, which is far away from the road. I known it in the first day of my school life. At...
2019-01-30 00:44:34
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原创 2019年1-4月份雅思口语题库素材（原创）describe a time you borrrowed something from your friends
At the beginning of my college life, I had no personal computer because my parents thought it was too expensive and unnecessary. However, after a month, I realize the importance of computer, therefo...
2019-01-30 00:43:52
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原创 2019年1-4月份雅思口语题库素材（原创） describe a magazine that you like
When it comes to my favorite magazine, it must be Nature. Nature is one of the most famous magazine which reports the newest scientific discoveries. After studying in university, I always need to lo...
2019-01-30 00:43:21
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原创 2019年1-4月份雅思口语题库素材（原创）describe something you made that you gave to others
Now, I am a medical student studying in Nantong university. In the last term, when I played basketball with my roommates, one of them hurt his leg. Doctors asked him to stay in hospital until the le...
2019-01-30 00:42:32
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原创 2019年1-4月份雅思口语题库素材（原创）describe an occasion when you were scared
About two year ago, it is my first time to left university and return home. I bought a train tickets, the price of which is suitable for me. I came to the train station and waited for train. suddenl...
2019-01-29 00:15:55
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原创 2019年1-4月份雅思口语题库素材（原创）describe something you own that you want to replace
Something I want to replace is iphone6, which looks like a small box. When I come to university, my parents brought me this Iphone. It had many functions. I can use it to download applications by Ap...
2019-01-29 00:15:22
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原创 2019年1-4月份雅思口语题库素材（原创）describe your grandparent job
Well, my grandfather is a cook now. He is now work for other people. In fact, he has his own restaurant and the only staff in the restaurant is himself. About 5 years ago, he retired from hospital a...
2019-01-29 00:14:36
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原创 2019年1-4月份雅思口语题库素材（原创）describe a popular comic actor actress in your country
When it comes to the popular comic actor, I want to introduce Zhao Benshan, who have been famous about thirty years ago. almost every Chinese know him because of his fabulous performance. When I was...
2019-01-29 00:13:56
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原创 2019年1-4月份雅思口语题库素材（原创）describe an interesting persion you would like to meet
About a year ago, I came to Bali, Indonesia, as an international volunteer with my classmates. Our work is mainly to help sea turtles breed and clean the beach. But we haven’t been to Bali, so we do...
2019-01-29 00:13:03
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原创 2019年1-4月份雅思口语题库素材（原创）describe an interesting job that you want to have in the future
Well, when I was in middle school, I wanted to be a doctor in the future, but my parents hope me to be a lawyer after I graduate; but in the end, I persuade them to agree me to choose the clinical m...
2019-01-29 00:12:15
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原创 2019年1-4月份雅思口语题库素材（原创）describe an interesting animal
I think that the most interesting animal is dog. Although it is common, it is really smart and considered as human friend. There are many kinds of dogs in the world. Therefore, the shapes of dogs ar...
2019-01-29 00:11:37
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原创 2019年1-4月份雅思口语题库素材（原创）describe a building you like
When It comes to the building I like, It must be the main teaching building in my school. As the main teaching building, it has many characteristics different from other teaching building. First of ...
2019-01-29 00:10:31
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原创 2019年1-4月份雅思口语题库素材（原创）describe someone you would like to study or work with
Now, I am a medical student studying in Nantong university. my dormitory has six people. One of them is named Lei Liu. He is an industrious people and always gets up early. In fact, almost everyday,...
2019-01-29 00:09:13
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原创 2019年1-4月份雅思口语题库素材（原创）describe a newly built public facility that influences your city
My home town is a small town where there has no cinema. So when I was a child, I have never seen a movie in the cinema. During this winter holiday, I came back home and have spring festival with my ...
2019-01-29 00:06:35
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原创 2019年1-4月份雅思口语题库素材（原创）describe a party that you joined
In the last summer holiday, I taken part in a summer project about clinic medicine. It was hold in Cambridge university. Therefore, I lived and studied in England for one month. In the end of the pr...
2019-01-28 23:55:30
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原创 2019年1-4月份雅思口语题库素材（原创）describe a language you want to learn
French is a foreign language I want to learn. As you know, almost all students in china need learn English, including me. However, I found that although English is important and popular around the w...
2019-01-28 23:54:53
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原创 2019年1-4月份雅思口语题库素材（原创）describe a complaint that you made and you were satisfied with the result
The story happened in the end of the first year of my college life. After final examination, my roommates and I decided to go to restaurant for celebration. We chose the nearest one beside our schoo...
2019-01-28 23:54:07
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