代码来自闵老师”日撸 Java 三百行(51-60天)“,链接:https://blog.csdn.net/minfanphd/article/details/116975957
Naive Bayes是通过概率分布来进行分类。基础理论知识见闵老师博客[1]:NB 算法 (包括符号型与数值型, 结合 Java 程序分析)_nb模型 java_闵帆的博客-CSDN博客
符号型数据的NB 算法主要有两个步骤,第一步是计算数据集类的分布。第二步是条件概率,是考虑Laplacian平滑的条件概率。
package datastructure.nb;
import java.io.FileReader;
import java.util.Arrays;
import weka.core.Instance;
import weka.core.Instances;
/**
* ********************************************
* The Naive Bayes algorithm.
*
* @author WX873
**********************************************
*/
public class NaiveBayes {
/**
* The data.
*/
Instances dataset;
/**
* The number of classes. For binary classification it is 2.
*/
int numClasses;
/**
* The number of instances.
*/
int numInstances;
/**
* The number of conditional attributes.
*/
int numConditions;
/**
* The prediction, including queried and predicted labels.
*/
int[] predicts;
/**
* Class distribution.
*/
double[] classDistribution;
/**
* Class distribution with Laplacian smooth.
*/
double[] classDistributionLaplacian;
/**
* To calculate the conditional probabilities for all classes over all
* attributes on all values.
*/
double[][][] conditionalCounts;
/**
* The conditional probabilities with Laplacian smooth.
*/
double[][][] conditionalProbabilitiesLaplacian;
/**
* Data type.
*/
int dataType;
/**
* Nominal
*/
public static final int NOMINAL = 0;
/**
* Numerical.
*/
public static final int NUMERICAL = 1;
/**
* **********************************************************
* The first constructor.
*
* @param paraFilename The given file.
* **********************************************************
*/
public NaiveBayes(String paraFilename) {
// TODO Auto-generated constructor stub
dataset = null;
try {
FileReader fileReader = new FileReader(paraFilename);
dataset = new Instances(fileReader);
fileReader.close();
} catch (Exception e) {
// TODO: handle exception
System.out.println("Cannot read the file: " + paraFilename + "\r\n" + e);
System.exit(0);
}//of try
dataset.setClassIndex(dataset.numAttributes() - 1);
numConditions = dataset.numAttributes() - 1;
numInstances = dataset.numInstances();
numClasses = dataset.attribute(numConditions).numValues();
}//The first constructor
/**
* **********************************************************
* The second constructor.
*
* @param paraInstances The instance of given file.
* **********************************************************
*/
public NaiveBayes(Instances paraInstances) {
// TODO Auto-generated constructor stub
dataset = paraInstances;
dataset.setClassIndex(dataset.numAttributes() - 1);
numConditions = dataset.numAttributes() - 1;
numInstances = dataset.numInstances();
numClasses = dataset.attribute(numConditions).numValues();
}//The second constructor
/**
* ****************************************************
* Set the data type.
* @param paraDataType
* ****************************************************
*/
public void setDataType(int paraDataType) {
dataType = paraDataType;
}//of setDataType
/**
* **************************************************************
* Calculate the class distribution with Laplacian smooth.
* **************************************************************
*/
public void calculateClassDistribution() {
classDistribution = new double[numClasses];
classDistributionLaplacian = new double[numClasses];
double[] tempCounts = new double[numClasses];
for (int i = 0; i < numInstances; i++) {
int tempClassValue = (int)dataset.instance(i).classValue();
tempCounts[tempClassValue]++;
}//of for i
for (int i = 0; i < numClasses; i++) {
classDistribution[i] = tempCounts[i]/numInstances;
classDistributionLaplacian[i] = (tempCounts[i] + 1)/(numInstances + numClasses);
}//of for i
System.out.println("Class distribution: " + Arrays.toString(classDistribution));
System.out.println("Class distribution Laplacian: " + Arrays.toString(classDistributionLaplacian));
}//of calculateClassDistribution
/**
* *****************************************************
* Calculate the conditional probabilities with Laplacian smooth.
* *****************************************************
*/
public void calculateConditionalProbabilities() {
conditionalCounts = new double[numClasses][numConditions][];
conditionalProbabilitiesLaplacian = new double[numClasses][numConditions][];
//Allocate space
for (int i = 0; i < numClasses; i++) {
for (int j = 0; j < numConditions; j++) {
int tempNumValues = (int)dataset.attribute(j).numValues(); //总共有多少个属性就申请多少个空间
conditionalCounts[i][j] = new double[tempNumValues];
conditionalProbabilitiesLaplacian[i][j] = new double[tempNumValues];
}//of for j
}//of for i
//Count the numbers of the same class and attribute.
int[] tempClassCounts = new int[numClasses];
for (int i = 0; i < numClasses; i++) {
int tempClass = (int)dataset.instance(i).classValue();
tempClassCounts[tempClass]++;
for (int j = 0; j < numConditions; j++) {
int tempValue = (int)dataset.instance(i).value(j);
conditionalCounts[tempClass][j][tempValue]++;
}//of for j
}//of for i
//Now for the real probability with Laplacian
for (int i = 0; i < numClasses; i++) {
for (int j = 0; j < numConditions; j++) {
int tempNumValues = (int)dataset.instance(i).attribute(j).numValues();
for (int k = 0; k < tempNumValues; k++) {
conditionalProbabilitiesLaplacian[i][j][k] = (conditionalCounts[i][j][k] + 1)/(tempClassCounts[i] + tempNumValues);
}//of for k
}//of for j
}//of for i
System.out.println("Conditional probabilities: " + Arrays.deepToString(conditionalCounts));
}//of calculateConditionalProbabilities
/**
* *******************************************************
* Classify all instances, the results are stored in predicts[].
* *******************************************************
*/
public void classify() {
predicts = new int[numInstances];
for (int i = 0; i < numInstances; i++) {
predicts[i] = classifyofDataTypeChose(dataset.instance(i));
}//of for i
}//of classify
/**
* *******************************************************
* Classify an instances according to the data type.
* @param paraInstance
* @return
* *******************************************************
*/
public int classifyofDataTypeChose(Instance paraInstance) {
if (dataType == NOMINAL) {
return classifyNominal(paraInstance);
}else if(dataType == NUMERICAL){
return 0;
}//of if
return -1;
}//of classifyofdataType
/**
* ********************************************************
* Classify an instances with nominal data.
* @param paraInstance
* @return BestIndex.
* ********************************************************
*/
public int classifyNominal(Instance paraInstance) {
// Find the biggest one.
double tempBiggest = -10000;
int resultBestIndex = 0;
for (int i = 0; i < numClasses; i++) {
double tempPseudoProbability = Math.log(classDistributionLaplacian[i]);
for (int j = 0; j < numConditions; j++) {
int tempAttributeValue = (int)paraInstance.value(j);
tempPseudoProbability += Math.log(conditionalProbabilitiesLaplacian[i][j][tempAttributeValue]);
}//of for j
if (tempBiggest < tempPseudoProbability) {
tempBiggest = tempPseudoProbability;
resultBestIndex = i;
}//of if
}//of for i
return resultBestIndex;
}//of classifyNominal
/**
* *****************************************
* Compute accuracy.
* @return accuracy
* *****************************************
*/
public double computeAccuracy() {
double tempCorrect = 0;
double resultAccuracy = 0;
for (int i = 0; i < numInstances; i++) {
if (predicts[i] == (int)dataset.instance(i).classValue()) {
tempCorrect++;
}//of if
}//of for i
resultAccuracy = tempCorrect/numInstances;
return resultAccuracy;
}//of computeAccuracy
/**
* ******************************
* Test nominal data.
* ******************************
*/
public static void testNominal() {
System.out.println("Hello, Naive Bayes. I only want to test the nominal data.");
String tempFilename = "E:/Datasets/UCIdatasets/mushroom.arff";
NaiveBayes tempLearner = new NaiveBayes(tempFilename);
tempLearner.setDataType(NOMINAL);
tempLearner.calculateClassDistribution();
tempLearner.calculateConditionalProbabilities();
tempLearner.classify();
System.out.println("The accuracy is: " + tempLearner.computeAccuracy());
}//of testNominal
/**
* **************************************
* The entrance of the program.
* @param args
* **************************************
*/
public static void main(String args[]) {
testNominal();
}//of main
}//of NaiveBayes