Leetcode Repeated DNA Sequences

All DNA is composed of a series of nucleotides abbreviated as A, C, G, and T, for example: "ACGAATTCCG". When studying DNA, it is sometimes useful to identify repeated sequences within the DNA.

Write a function to find all the 10-letter-long sequences (substrings) that occur more than once in a DNA molecule.

For example,

Given s = "AAAAACCCCCAAAAACCCCCCAAAAAGGGTTT",

Return:
["AAAAACCCCC", "CCCCCAAAAA"].

Difficulty: Medium


Solution: Two naive solutions using hashtable and hashmap. They are almost the same thing. The best solution is using bitmap: 

Link: http://www.programcreek.com/2014/03/leetcode-repeated-dna-sequences-java/



HashMap:


public class Solution {
    public List<String> findRepeatedDnaSequences(String s) {
        HashMap<String, Integer> ht = new HashMap<String, Integer>();
        List<String> res = new ArrayList<String>();
        int len = s.length();
        for(int i = 0; i <= len - 10; i++){
            String temp = s.substring(i, i + 10);
            if(!ht.containsKey(temp)){
                ht.put(temp, 1);
            }
            else{
                ht.put(temp, ht.get(temp) + 1);
            }
        }
        for (Map.Entry<String, Integer> entry : ht.entrySet()) {
            String key = entry.getKey();
            int value = entry.getValue();
            if(value > 1)
                res.add(key);
        }
        
        return res;
    }
}



Hashtable:

import java.util.Hashtable;
import java.util.Enumeration;

public class Solution {
    public List<String> findRepeatedDnaSequences(String s) {
        Hashtable<String, Integer> ht = new Hashtable<String, Integer>();
        List<String> res = new ArrayList<String>();
        int len = s.length();
        for(int i = 0; i <= len - 10; i++){
            String temp = s.substring(i, i + 10);
            if(!ht.containsKey(temp)){
                ht.put(temp, 1);
            }
            else{
                ht.put(temp, ht.get(temp) + 1);
            }
        }
        Enumeration<String> enumKey = ht.keys();  
        while(enumKey.hasMoreElements()) {  
            String key = enumKey.nextElement();  
            if(ht.get(key) > 1)
                res.add(key);
        } 
        return res;
        
    }
}



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