matlab freeplot,[转载]如何用matlab plot出好看的Bar图

Summary

This

explains the basics of making pretty bar plots in Matlab. The

Matlab "bar" command is used, along with some nice scripts

discovered on the Matlab file exchange.

Example

Suppose you

have some experimental data from two strains (Strain 1 and Strain

2) under four different experiment conditions (Condition A,B,C,D).

The means and standard deviations of your measurement of interest

look like:

Strain1_Mean=[0.5137 3.2830 1.5887 5.9188];

Strain2_Mean=[0.4042 2.9884 0.5709 2.7766];

Strain1_std=[1.1393 2.8108 2.2203 3.5233];

Strain2_std=[0.8762 2.8478 0.9878 2.2197];

Use

Matlab's bar command to

plot this data (without error bars) as a bar chart:

bar([1 2 3 4],[Strain1_Mean' Strain2_Mean'])

legend('Strain 1','Strain 2')

pause; close all;

This looks

ok, but we would really like some error bars, so we use a handy

function (barwitherr) from the Matlab file exchange:

h=figure; hold;

barwitherr([Strain1_std' Strain2_std'], [1 2 3 4],[Strain1_Mean' Strain2_Mean'])

legend('Strain 1','Strain 2')

pause; close all;

This is ok,

but we'd rather only have one-sided error bars. To do this, use a

4x2x2 matrix for the errors: cat(3,zeros(4,2),[Strain1_std'

Strain2_std'])

The

function barwitherr uses the first matrix zeros(4,2) as the lower

error, and the second matrix [Strain1_std' Strain2_std'] for the

upper errors:

barwitherr(cat(3,zeros(4,2),[Strain1_std' Strain2_std']), [1 2 3 4],[Strain1_Mean' Strain2_Mean'])

legend('Strain 1','Strain 2')

pause; close all;

Don't like

the colors? You can change them by modifying the colormap:

barmap=[0.7 0.7 0.7; 0.05 .45 0.1]; %[0.7 0.7 0.7] is grey, [ 0.05 .45 0.1] is green

colormap(barmap);

ylabel('Data','FontSize',14)

title('Title of Experiment','FontSize',14)

pause;

It isn't

very useful to have our experimental conditions labelled 1,2,3,4.

To change the x-ticks to labels:

set(ax, 'XTick',[1 2 3 4],'XTickLabel',{'A','B','C','D' });

pause;

Maybe we

would like more information in our x-tick labels. But if the labels

are too long, they will overlap. To get around this, rotate the

x-tick labels using the function xticklabel_rotate from the Matlab

file exchange (see references below):

set(ax, 'FontSize',12,'XTick',[1 2 3 4],'XTickLabel',{'Condition A','Condition B','Condition C','Condition D' });

xticklabel_rotate([1 2 3 4],45,{'Condition A','Condition B','Condition C','Condition D' })

pause

If you are going to use this figure in a presentation or paper you

can save it in various forms (including as a file for adobe

illustrator). Recall that h is our figure handle:

saveas(h, 'ExampleBar.fig','fig')

saveas(h, 'ExampleBar.png','png')

saveas(h, 'ExampleBar.ai','ai')

close all;

Code

You can

copy and paste the code below into a Matlab m-file to run all of

the examples shown above. You will also need the two functions

listed in the references below, available from the Matlab file

exchange at

close all;

%Suppose you have the following data for two different strains across 4

%different experimental conditions (Conditions A,B,C,D, from left to right)

Strain1_Mean=[0.5137 3.2830 1.5887 5.9188];

Strain2_Mean=[0.4042 2.9884 0.5709 2.7766];

Strain1_std=[1.1393 2.8108 2.2203 3.5233];

Strain2_std=[0.8762 2.8478 0.9878 2.2197];

%Plot this data as a bar chart

bar([1 2 3 4],[Strain1_Mean' Strain2_Mean'])

legend('Strain 1','Strain 2')

pause; close all;

%This looks ok, but we would really like some error bars, so we use a handy

%function from the file exchange:

h=figure; hold;

barwitherr([Strain1_std' Strain2_std'], [1 2 3 4],[Strain1_Mean' Strain2_Mean'])

legend('Strain 1','Strain 2')

pause; close all;

%This is ok, but we'd rather only have one-sided error bars. To do this,

%you will send barwitherr zeros for the lower error and keep the upper

%error as is by sending in the matrix cat(3,zeros(4,2),[Strain1_std'

%Strain2_std']) for the error

barwitherr(cat(3,zeros(4,2),[Strain1_std' Strain2_std']), [1 2 3 4],[Strain1_Mean' Strain2_Mean'])

legend('Strain 1','Strain 2')

pause; close all;

%Now let's use better colors by changing the color map and set the bar

%widths, line widths, axis fonts etc to something prettier

barwitherr(cat(3,zeros(4,2),[Strain1_std' Strain2_std']), [1 2 3 4],[Strain1_Mean' Strain2_Mean'],'LineWidth',2,'BarWidth',0.9)

legend('Strain 1','Strain 2')

%set the axis properties

ax=gca;

set(ax, 'FontSize',12)

%Don't like the colors? You can change them by modifying the colormap:

barmap=[0.7 0.7 0.7; 0.05 .45 0.1]; %[0.7 0.7 0.7] is grey, [ 0.05 .45 0.1] is a green

colormap(barmap);

ylabel('Data','FontSize',14)

title('Title of Experiment','FontSize',14)

pause;

%It isn't very useful to have our experimental conditions labelled 1,2,3,4

%so can we change these to words? Yes:

set(ax, 'XTick',[1 2 3 4],'XTickLabel',{'A','B','C','D' });

pause;

%But this isn't perfect, maybe we want more information on the axis. To

%have actual labels rotate them using the handy xticklabel_rotate function:

%set(ax, 'FontSize',12,'XTick',[1 2 3 4],'XTickLabel',{'Condition A','Condition B','Condition C','Condition D' });

xticklabel_rotate([1 2 3 4],45,{'Condition A','Condition B','Condition C','Condition D' })

pause

%If you are going to use this figure in a presentation or paper you can

%save it in various forms (including as a file for adobe illustrator):

%Recall that h is our figure handle:

saveas(h, 'ExampleBar.fig','fig')

saveas(h, 'ExampleBar.png','png')

saveas(h, 'ExampleBar.ai','ai')

close all;

Notes

Please feel

free to post comments, questions, or improvements to this protocol.

Happy to have your input!

Megan N McClean 17:27, 11 June 2012 (EDT):

There are probably more elegant ways of doing this, but this

solution has worked well for me so far. Please feel free to update

and add information as you figure out better ways of doing

this.

References

Function

xticklabel_rotate:

Function

barwitherr:

Contact

Megan N McClean 14:01, 11 June 2012

(EDT)