我没有花时间去弄清楚你所有的代码,只是第一部分。第一个问题是在设置中:kmerdict = {}
innerdict = {'endcover':0, 'coverdict':{}, 'coverholder':[], 'uncovered':0,
'lowstart':0,'totaluncover':0, 'totalbases':0}
for kmer in kmerlist: # build kmerdict
kmerdict [kmer] = {}
for chrom in fas: #open file and read line
chromnum = chrom[3:-3]
kmerdict [kmer][chromnum] = innerdict
创建innerdict一次,然后继续重复使用同一个字典。换句话说,每个kmerdict[kmer][chromnum]引用相同的对象。也许把最后一行改成:
^{pr2}$
会有帮助(在文件顶部适当导入copy)?或者,您可以将innerdict的创建移动到内部循环中,如注释所示:def get_inner_dict():
return {'endcover':0, 'coverdict':{}, 'coverholder':[], 'uncovered':0,
'lowstart':0,'totaluncover':0, 'totalbases':0}
kmerdict = {}
for kmer in kmerlist: # build kmerdict
kmerdict [kmer] = {}
for chrom in fas: #open file and read line
chromnum = chrom[3:-3]
kmerdict [kmer][chromnum] = get_inner_dict()
我决定使用一个函数使它更易于阅读:)。在