mha格式转换nii格式(brats2015转2018格式)

import skimage.io as io
import SimpleITK as sitk
import os

MHA_Path='F:/BRATS/Testing/HGG_LGG'
NII_Path='F:/BRATS/Testing/HL'


MHA_List=os.listdir(MHA_Path)
# 输入每个病例的文件名
for MHA_ONE in MHA_List:
    # 将文件名加入路径中
    MHA_ONE_Path=os.path.join(MHA_Path,MHA_ONE)
    Mode_List=os.listdir(MHA_ONE_Path)
    NII_Mode_Path = os.path.join(NII_Path, MHA_ONE)
    # 输入每个病例的不同模态文件名
    for Mode_ONE in Mode_List:
        Mode_Path = os.path.join(MHA_ONE_Path,Mode_ONE)
        # 输入每个模态文件的HDF5内容
        # print(Mode_Path) # F:/BRATS/brats2015/HGG_LGG\brats_2013_pat0103_1\VSD.Brain.XX.O.MR_Flair.54193
        # mha数据输入路径
        path = Mode_Path + "/" + Mode_ONE + ".mha"

        print(NII_Mode_Path)
        # 读入mha数据
        print(Mode_ONE)
        img = io.imread(path, plugin='simpleitk')
        out = sitk.GetImageFromArray(img)
        outputFileName=str(NII_Mode_Path+"/"+Mode_ONE + '.nii.gz')
        sitk.WriteImage(out, outputFileName)

print("输出完成！")