%% Machine Learning Online Class - Exercise 2: Logistic Regression
%
% Instructions
% ------------
%
% This file contains code that helps you get started on the logistic
% regression exercise. You will need to complete the following functions
% in this exericse:
%
% sigmoid.m
% costFunction.m
% predict.m
% costFunctionReg.m
%
% For this exercise, you will not need to change any code in this file,
% or any other files other than those mentioned above.
%
%% Initialization
clear ; close all; clc
%% Load Data
% The first two columns contains the exam scores and the third column
% contains the label.
data = load('ex2data1.txt');
X = data(:, [1, 2]); y = data(:, 3);
Part 1: Plotting
% We start the exercise by first plotting the data to understand the
% the problem we are working with.
fprintf(['Plotting data with + indicating (y = 1) examples and o ' ...
'indicating (y = 0) examples.\n']);
plotData(X, y);
% Put some labels
hold on;
% Labels and Legend
xlabel('Exam 1 score')
ylabel('Exam 2 score')
% Specified in plot order
legend('Admitted', 'Not admitted')
hold off;
fprintf('\nProgram paused. Press enter to continue.\n');
pause;
Part 2: Compute Cost and Gradient
% In this part of the exercise, you will implement the cost and gradient
% for logistic regression. You neeed to complete the code in
% costFunction.m
% Setup the data matrix appropriately, and add ones for the intercept term
[m, n] = size(X);
% Add intercept term to x and X_test
X = [ones(m, 1) X];
% Initialize fitting parameters
initial_theta = zeros(n + 1, 1);
% Compute and display initial cost and gradient
[cost, grad] = costFunction(initial_theta, X, y);
fprintf('Cost at initial theta (zeros): %f\n', cost);
fprintf('Expected cost (approx): 0.693\n');
fprintf('Gradient at initial theta (zeros): \n');
fprintf(' %f \n', grad);
fprintf('Expected gradients (approx):\n -0.1000\n -12.0092\n -11.2628\n');
% Compute and display cost and gradient with non-zero theta
test_theta = [-24; 0.2; 0.2];
[cost, grad] = costFunction(test_theta, X, y);
fprintf('\nCost at test theta: %f\n', cost);
fprintf('Expected cost (approx): 0.218\n');
fprintf('Gradient at test theta: \n');
fprintf(' %f \n', grad);
fprintf('Expected gradients (approx):\n 0.043\n 2.566\n 2.647\n');
fprintf('\nProgram paused. Press enter to continue.\n');
pause;
function [J, grad] = costFunction(theta, X, y)
%COSTFUNCTION Compute cost and gradient for logistic regression
% J = COSTFUNCTION(theta, X, y) computes the cost of using theta as the
% parameter for logistic regression and the gradient of the cost
% w.r.t. to the parameters.
% Initialize some useful values
m = length(y); % number of training examples
% You need to return the following variables correctly
J = 0;
grad = zeros(size(theta));
% ====================== YOUR CODE HERE ======================
% Instructions: Compute the cost of a particular choice of theta.
% You should set J to the cost.
% Compute the partial derivatives and set grad to the partial
% derivatives of the cost w.r.t. each parameter in theta
%
% Note: grad should have the same dimensions as theta
%
% calculate cost function
z = X*theta;
h_x = sigmoid(z);
J = (1/m)*sum((-y.*log(h_x))-((1-y).*log(1-h_x)));%scalar
grad = (1/m)*(X'*(h_x-y)); %(n+1)*1
% =============================================================
end
function plotDecisionBoundary(theta, X, y)
%PLOTDECISIONBOUNDARY Plots the data points X and y into a new figure with
%the decision boundary defined by theta
% PLOTDECISIONBOUNDARY(theta, X,y) plots the data points with + for the
% positive examples and o for the negative examples. X is assumed to be
% a either
% 1) Mx3 matrix, where the first column is an all-ones column for the
% intercept.
% 2) MxN, N>3 matrix, where the first column is all-ones
% Plot Data
plotData(X(:,2:3), y);
hold on
if size(X, 2) <= 3
% Only need 2 points to define a line, so choose two endpoints
plot_x = [min(X(:,2))-2, max(X(:,2))+2];
% Calculate the decision boundary line
plot_y = (-1./theta(3)).*(theta(2).*plot_x + theta(1));
% Plot, and adjust axes for better viewing
plot(plot_x, plot_y)
% Legend, specific for the exercise
legend('Admitted', 'Not admitted', 'Decision Boundary')
axis([30, 100, 30, 100])
else
% Here is the grid range
u = linspace(-1, 1.5, 50);
v = linspace(-1, 1.5, 50);
z = zeros(length(u), length(v));
% Evaluate z = theta*x over the grid
for i = 1:length(u)
for j = 1:length(v)
z(i,j) = mapFeature(u(i), v(j))*theta;
end
end
z = z'; % important to transpose z before calling contour
% Plot z = 0
% Notice you need to specify the range [0, 0]
contour(u, v, z, [0, 0], 'LineWidth', 2)
end
hold off
end
function out = mapFeature(X1, X2)
% MAPFEATURE Feature mapping function to polynomial features
%
% MAPFEATURE(X1, X2) maps the two input features
% to quadratic features used in the regularization exercise.
%
% Returns a new feature array with more features, comprising of
% X1, X2, X1.^2, X2.^2, X1*X2, X1*X2.^2, etc..
%
% Inputs X1, X2 must be the same size
%
degree = 6;
out = ones(size(X1(:,1)));
for i = 1:degree
for j = 0:i
out(:, end+1) = (X1.^(i-j)).*(X2.^j);
end
end
end
Part 3: Optimizing using fminunc
% In this exercise, you will use a built-in function (fminunc) to find the
% optimal parameters theta.
% Set options for fminunc
options = optimset('GradObj', 'on', 'MaxIter', 400);
% Run fminunc to obtain the optimal theta
% This function will return theta and the cost
[theta, cost] = ...
fminunc(@(t)(costFunction(t, X, y)), initial_theta, options);
% Print theta to screen
fprintf('Cost at theta found by fminunc: %f\n', cost);
fprintf('Expected cost (approx): 0.203\n');
fprintf('theta: \n');
fprintf(' %f \n', theta);
fprintf('Expected theta (approx):\n');
fprintf(' -25.161\n 0.206\n 0.201\n');
% Plot Boundary
plotDecisionBoundary(theta, X, y);
% Put some labels
hold on;
% Labels and Legend
xlabel('Exam 1 score')
ylabel('Exam 2 score')
% Specified in plot order
legend('Admitted', 'Not admitted')
hold off;
fprintf('\nProgram paused. Press enter to continue.\n');
pause;
Part 4: Predict and Accuracies
% After learning the parameters, you'll like to use it to predict the outcomes
% on unseen data. In this part, you will use the logistic regression model
% to predict the probability that a student with score 45 on exam 1 and
% score 85 on exam 2 will be admitted.
%
% Furthermore, you will compute the training and test set accuracies of
% our model.
%
% Your task is to complete the code in predict.m
% Predict probability for a student with score 45 on exam 1
% and score 85 on exam 2
prob = sigmoid([1 45 85] * theta);
fprintf(['For a student with scores 45 and 85, we predict an admission ' ...
'probability of %f\n'], prob);
fprintf('Expected value: 0.775 +/- 0.002\n\n');
% Compute accuracy on our training set
p = predict(theta, X);
fprintf('Train Accuracy: %f\n', mean(double(p == y)) * 100);
fprintf('Expected accuracy (approx): 89.0\n');
fprintf('\n');
function g = sigmoid(z)
%SIGMOID Compute sigmoid function
% g = SIGMOID(z) computes the sigmoid of z.
% You need to return the following variables correctly
g = zeros(size(z));
% ====================== YOUR CODE HERE ======================
% Instructions: Compute the sigmoid of each value of z (z can be a matrix,
% vector or scalar).
g =1./(1+exp(-z));
% =============================================================
end
function [J, grad] = costFunctionReg(theta, X, y, lambda)
%COSTFUNCTIONREG Compute cost and gradient for logistic regression with regularization
% J = COSTFUNCTIONREG(theta, X, y, lambda) computes the cost of using
% theta as the parameter for regularized logistic regression and the
% gradient of the cost w.r.t. to the parameters.
% Initialize some useful values
m = length(y); % number of training examples
% You need to return the following variables correctly
J = 0;
grad = zeros(size(theta));
% ====================== YOUR CODE HERE ======================
% Instructions: Compute the cost of a particular choice of theta.
% You should set J to the cost.
% Compute the partial derivatives and set grad to the partial
% derivatives of the cost w.r.t. each parameter in theta
z = X*theta;
h_x = sigmoid(z);
reg_term = (lambda/(2*m))*sum(theta(2:end).^2);
J = (1/m)*sum(-y.*log(h_x)-(1-y).*log(1-h_x))+reg_term;%scalar
grad(1) = (1/m)*(X(:,1)'*(h_x-y));
grad(2:end) = (1/m)*(X(:,2:end)'*(h_x-y))+(lambda/m)*theta(2:end);
% =============================================================
end
function p = predict(Theta1, Theta2, X)
%PREDICT Predict the label of an input given a trained neural network
% p = PREDICT(Theta1, Theta2, X) outputs the predicted label of X given the
% trained weights of a neural network (Theta1, Theta2)
% Useful values
m = size(X, 1);
num_labels = size(Theta2, 1);
% You need to return the following variables correctly
p = zeros(size(X, 1), 1);
% ====================== YOUR CODE HERE ======================
% Instructions: Complete the following code to make predictions using
% your learned neural network. You should set p to a
% vector containing labels between 1 to num_labels.
%
% Hint: The max function might come in useful. In particular, the max
% function can also return the index of the max element, for more
% information see 'help max'. If your examples are in rows, then, you
% can use max(A, [], 2) to obtain the max for each row.
%
% add bias
X = [ones(m, 1) X];
for j=1:m,
%first layer propagation
z2 = sigmoid(X(j,:) * Theta1');
%bias to hidden layer
z2 = [1 z2];
%hidden layer propagation and getting max (candidate)
[trash,p(j)] = max(sigmoid(z2 * Theta2'));
end;
% =========================================================================
end
ex2.m%% Machine Learning Online Class - Exercise 2: Logistic Regression%% Instructions% ------------% % This file contains code that helps you get started on the logistic% regression exerci...