shiny-server 安装与配置、问题汇总

shiny-server 安装与配置、问题汇总

1 安装

环境：centos6.5

• 1.1 安装R

$ sudo yum install R

• 1.2 进入R，安装包shiny,rmarkdown

install.packages('shiny')
install.packages('rmarkdown')

• 1.3 安装shiny-server

$ wget https://download3.rstudio.org/centos5.9/x86_64/shiny-server-1.4.2.786-rh5-x86_64.rpm
$ sudo yum install --nogpgcheck shiny-server-1.4.2.786-rh5-x86_64.rpm

查看是否安装成功：进入ip:3838

2 启动

start shiny-server
stop shiny-server
status shiny-server
reload shiny-server

3 配置

• 3.1 默认配置

cat /etc/shiny-server/shiny-server.conf

首页：/srv/shiny-server/index.html
shiny app 的目录：/srv/shiny-server/sample-apps
详细配置参数见：shiny-server conf settings

4 注意问题

• 4.1 The application took too long to respond.

修改/etc/shiny-server/shiny-server.conf中的参数增加延时

$ vi /etc/shiny-server/shiny-server.conf
app init timeout 300;
app idle timeout 300;

• 4.2 linux文件建立连接（软连接、硬链接）

建立文件夹软连接

ln -s /home/xuwy/flow_model /srv/shiny-server/app_flow

删除

rm -rf /home/xuwy/flow_model

注意不可按照以下方式删除(会直接删除对应原文件的子目录下所有文件)

rm -rf /home/xuwy/flow_model/

• 4.3 HTML的图片插入相对路径

与index.html相同路径的直接使用

<img src="mac_heatmap_gg.gif" alt="mac View" style="width:1104px;height:528px;">

子目录下的使用方法

<img src="/images/mac_heatmap_gg.gif" alt="mac View" style="width:1104px;height:528px;">

• 4.4 shiny project中有load(./xx.RData)

xx.RData会间隔时间变化，但是shiny-server不会实时更新，只能采取间隔时间重启shiny-server服务

restart shiny-server

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备注
将shiny project 或者 rmarkdown嵌入到html

  <div id="shiny">
    <iframe src="./sample-apps/hello/" style="border: 1px solid #AAA; width: 290px; height: 460px"></iframe>
    <div class="caption">
      When Shiny is properly configured on your server, you'll see a Shiny app above.
    </div>

    <iframe src="./sample-apps/rmd/" style="border: 1px solid #AAA; width: 290px; height: 420px"></iframe>
    <div class="caption">
      With Shiny and <code>rmarkdown</code> installed, you should see a Shiny doc above.
    </div>
  </div>