The import and export of data in iPhlyo-CSDN博客

本文链接：https://blog.csdn.net/ymy2019/article/details/135076763

The import and export of data in iPhlyo

Import:

1.1 Treefile: Uploading information are in the basic feature part of the dashboard.
- **Select-file: **Click the browse button to upload a tree file in plain text files, and in one of supported formats format (Newick, Nexus, PhyloXML and Phylip).
- Example treefile:
  - Example trees in Newick format:
    - A tree with bootstraps and branch lengths:
      - (A:0.1,(B:0.1,C:0.1)90:0.1)98:0.3);

           - _A, B, C _: leaf names, also used as node IDs
           - 0.1, 0.3 : branch lengths
           - _90,98_ : bootstrap values

     - A tree with internal node IDs:
        - (A:0.1,(B:0.1,C:0.1)INT1:0.1[90])INT2:0.3[98]);

           - A, B, C : leaf names, also used as node IDs
           - INT1, INT2 : internal node IDs
           - 0.1, 0.3 : branch lengths
           - 90,98 : bootstrap values

  - **Example trees in Newick format**

1.2 Annotation file: Uploading information are in the Leaf annotation and Node annotation part of the dashboard.
- **Select-file: **Click the browse button to upload a leaf/node annotation file in plain text files sep with “,”,“\t” or “;”.
Example leaf annotation file:
Example node annotation file:
**1.3 Session: **Optionally import session files downloaded from iPhylo is also supported from the top right of the page inorder to upload and restore the drawing state.

Export:

Download the PNG,JPEG or PDF file format: iPhylo Visual offers various tree image export formats, including PNG, PDF, and JPEG.
Download the R code：The Download R scripts feature allow users to save the plotting code for the visualized and annotated tree with a single click.
Download the whole session: Clik the Session button allows users to export “.iphylo” files pack all essential data for generating trees with iPhylo.