医学影像数据-mhd，nii与DICOM相互转换

 mhd to NIFTI/ nii

import SimpleITK as sitk

img = sitk.ReadImage("input.mha")
sitk.WriteImage(img, "output.nii")

nii to mhd

import os
import SimpleITK as sitk
reader=sitk.ReadImage("output.nii")
print(reader)
print(reader.GetSpacing())


PixelSpacing = reader.GetSpacing()
Origin = PixelSpacing = reader.GetOrigin()
#Origin = referencect.ImagePositionPatient
img=sitk.GetArrayFromImage(reader) #z y x
img2=sitk.GetImageFromArray(img) #z y x
img2.SetSpacing(PixelSpacing)
img2.SetOrigin(Origin)
sitk.WriteImage(img2,"testmha.mha")

NIFTI to DICOM

• https://github.com/biolab-unige/nifti2dicom(推荐使用)

• nifti2dicom -i FLAIR.nii.gz -o FLAIR_DICOM -a 12345

DICOM to NIFTI

https://github.com/rordenlab/dcm2niix

DICOM to mhd

https://blog.csdn.net/Ericohe/article/details/112004246

参考

https://simpleitk.readthedocs.io/en/master/link_AdvancedImageReading_docs.html