使用DeeperGCN训练和测试SEED数据集

KPer_Yang

已于 2023-04-09 14:16:09 修改

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分类专栏：机器学习文章标签：深度学习 pytorch python

于 2023-02-15 22:00:08 首次发布

本文链接：https://blog.csdn.net/KPer_Yang/article/details/129051585

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文章介绍了一个用PyTorch实现的ECG_DeeperGCNs模型，该模型基于图神经网络（GENConv）进行心电图数据的分析。模型包含多层DeepGCNLayer，用于学习节点特征，并使用Adam优化器和交叉熵损失函数进行训练。代码还定义了训练和测试过程，以及数据加载器。模型在SEED数据集上进行训练和评估。

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# -*- coding: utf-8 -*-
#
# Copyright (C) 2022 Emperor_Yang, Inc. All Rights Reserved 
#
# @CreateTime    : 2023/2/9 22:12
# @Author        : Emperor_Yang 
# @File          : ECG_DeepGCNs.py
# @Software      : PyCharm

import torch
from torch.nn import ReLU
from easydict import EasyDict
from torch_geometric.nn import GENConv, LayerNorm, DeepGCNLayer, global_add_pool
from torch_geometric.data import DataLoader
from data_process.seed_loader_gnn_memory import SeedGnnMemoryDataset

config = EasyDict()
config.learn_rate = 0.01
config.epoch = 5
config.note_feature_dim = 5
config.note_num = 62
config.hidden_channels = 16
config.class_num = 3
config.hidden_layers = 2
config.batch_size = 16
config.max_loss_increase_time = 3


class ECG_DeeperGCNs(torch.nn.Module):
    """
    GCN handle ECG
    """

    def __init__(self, in_channels, hidden_channels, out_channels):
        super(ECG_DeeperGCNs, self).__init__()

        self.layers = torch.nn.ModuleList()
        for i in range(1, config.hidden_layers + 1):
            conv = GENConv(hidden_channels, hidden_channels, aggr='softmax',
                           t=1.0, learn_t=True, num_layers=2, norm='layer')
            norm = LayerNorm(hidden_channels)
            act = ReLU(inplace=True)

            layer = DeepGCNLayer(conv, norm, act, block='res+', dropout=0.1)
            self.layers.append(layer)

        self.fc1 = torch.nn.Linear(hidden_channels , out_channels)

    def forward(self, x, edge_index, index, edge_weight=None):
        """
        forward
        :param index:
        :param x:note feature
        :param edge_index:edge pair
        :param edge_weight: edge feature
        :return:
        """
        for layer in self.layers[1:]:
            x = layer(x, edge_index, edge_weight)
        x = global_add_pool(x, index)
        x = self.fc1(x)
        return x


model = ECG_DeeperGCNs(config.note_feature_dim, config.hidden_channels, config.class_num)
data_set = SeedGnnMemoryDataset(root='../data/SEED/', processed_file='1_20131027.pt')
train_data_set = data_set[: int(0.8 * data_set.len())]
test_data_set = data_set[int(0.8 * data_set.len()):]
train_data_loader = DataLoader(train_data_set, batch_size=config.batch_size, shuffle=True)
test_data_loader = DataLoader(test_data_set, batch_size=config.batch_size, shuffle=False)
optimizer = torch.optim.Adam(model.parameters(), lr=config.learn_rate)
criterion = torch.nn.CrossEntropyLoss()


def train():
    loss_sum = 0
    data_size = 0
    for mini_batch in train_data_loader:
        if mini_batch.num_graphs == config.batch_size:
            data_size += mini_batch.num_graphs
            model.train()
            optimizer.zero_grad()
            out = model(mini_batch.x, mini_batch.edge_index, mini_batch.batch)
            loss = criterion(out, mini_batch.y)
            loss.backward()
            optimizer.step()
            loss_sum += loss.item() / mini_batch.num_graphs
    return loss_sum / data_size


def test():
    count = 0
    data_size = 0
    for mini_batch in test_data_loader:
        if mini_batch.num_graphs == config.batch_size:
            out = model(mini_batch.x, mini_batch.edge_index, mini_batch.batch)
            predict = torch.argmax(out, dim=1)
            count += int(predict.eq(mini_batch.y).sum())
            data_size += mini_batch.num_graphs
    print("Test Accuracy:{}%".format(count / data_size * 100))


if __name__ == '__main__':
    loss_increase_time = 0
    last_lost = 1
    for epoch in range(config.epoch):
        avg_loss = train()
        print("epoch:{}, loss:{}".format(epoch + 1, avg_loss))
        if avg_loss > last_lost:
            loss_increase_time += 1
        else:
            last_lost = avg_loss
        # 如果连续增加loss大于config.max_loss_increase_time，则停止训练
        if loss_increase_time > config.max_loss_increase_time:
            break
    test()