读书笔记---Bioinformatics Data Skills

在这里插入图片描述

最近阅读了《Bioinformatics Data Skills》,是不错的生物信息学入门书,本文作者简介如下:
在这里插入图片描述全书以下面三个方向展开,为生物信息学的继续学习指明了道路:

1)生物信息学数据技巧(第一章)
可靠和可重复的工作
2)生物信息学必要技能(第二章到第六章)
Python、R、Shell、Git、Markdown
3)生物信息学数据技巧(第七章到第十三章,第十四章总结)
生物信息学基本文件格式,Fastq、Fasta、SAM、BAM、VCF,和生物信息学软件简介

其中第9章我在IRanges和GenomicRanges软件应用不多,需要可以再看;第13章SQLite只是简单过一遍。

全书内容全面,适合入门学习,开卷有益。

第十四章 Conclusions部分给出的继续学习建议也很不错:

1)Learn More Statistics
2)Learn More Computer Science(especially Algrithms and Data Structure)
3)Polish Coding Ability(Read More Source Code to Improve Yourself)

在这里插入图片描述在这里插入图片描述
继续努力,共勉。

  • 0
    点赞
  • 0
    收藏
    觉得还不错? 一键收藏
  • 0
    评论
This practical book teaches the skills that scientists need for turning large sequencing datasets into reproducible and robust biological findings. Many biologists begin their bioinformatics training by learning scripting languages like Python and R alongside the Unix command line. But there's a huge gap between knowing a few programming languages and being prepared to analyze large amounts of biological data. Rather than teach bioinformatics as a set of workflows that are likely to change with this rapidly evolving field, this book demsonstrates the practice of bioinformatics through data skills. Rigorous assessment of data quality and of the effectiveness of tools is the foundation of reproducible and robust bioinformatics analysis. Through open source and freely available tools, you'll learn not only how to do bioinformatics, but how to approach problems as a bioinformatician. Go from handling small problems with messy scripts to tackling large problems with clever methods and tools Focus on high-throughput (or "next generation") sequencing data Learn data analysis with modern methods, versus covering older theoretical concepts Understand how to choose and implement the best tool for the job Delve into methods that lead to easier, more reproducible, and robust bioinformatics analysis Table of Contents Part I. Ideology: Data Skills for Robust and Reproducible Bioinformatics Chapter 1. How to Learn Bioinformatics Part II. Prerequisites: Essential Skills for Getting Started with a Bioinformatics Project Chapter 2. Setting Up and Managing a Bioinformatics Project Chapter 3. Remedial Unix Shell Chapter 4. Working with Remote Machines Chapter 5. Git for Scientists Chapter 6. Bioinformatics Data Part III. Practice: Bioinformatics Data Skills Chapter 7. Unix Data Tools Chapter 8. A Rapid Introduction to the R Language Chapter 9. Working with Range Data Chapter 10. Working with Sequence Data Chapter 11. Working with Alignment Data Chapter 12. Bioinformatics Shell Scripting, Writing Pipelines, and Parallelizing Tasks Chapter 13. Out-of-Memory Approaches: Tabix and SQLite Chapter 14. Conclusion
评论
添加红包

请填写红包祝福语或标题

红包个数最小为10个

红包金额最低5元

当前余额3.43前往充值 >
需支付:10.00
成就一亿技术人!
领取后你会自动成为博主和红包主的粉丝 规则
hope_wisdom
发出的红包
实付
使用余额支付
点击重新获取
扫码支付
钱包余额 0

抵扣说明:

1.余额是钱包充值的虚拟货币,按照1:1的比例进行支付金额的抵扣。
2.余额无法直接购买下载,可以购买VIP、付费专栏及课程。

余额充值