在服务器centos上，当安装速度太慢，R的包安装不上，应该怎么办？下载到本地手动安装

问题描述：

本人在服务器上安装R包genomation发现速度太慢，而且会报错

Installing package into ‘/root/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://bioconductor.org/packages/3.9/bioc/src/contrib/genomation_1.16.0.tar.gz'
Content type 'application/octet-stream' length 6293891 bytes (6.0 MB)
===================
downloaded 2.3 MB

Error in download.file(p, destfile, method, mode = "wb", ...) : 
  download from 'https://bioconductor.org/packages/3.9/bioc/src/contrib/genomation_1.16.0.tar.gz' failed
In addition: Warning messages:
1: In download.file(p, destfile, method, mode = "wb", ...) :
  downloaded length 2435292 != reported length 6293891
2: In download.file(p, destfile, method, mode = "wb", ...) :

为解决该问题准备，准备将包genomation下载到本地，然后手动安装，在Bioconductor - BiocViews下载

输入命令，下载到本地，下载后就是解压后的包

git clone https://git.bioconductor.org/packages/genomation

安装genimation 

setwd("/home/bio_soft") #给出下载的文件所在位置
install.packages("genomation", repos=NULL) #安装包

此时出现报错

ERROR: dependency ‘seqPattern’ is not available for package ‘genomation’
* removing ‘/root/R/x86_64-pc-linux-gnu-library/3.6/genomation’
Warning message:
In install.packages("genomation_1.16.0.tar.gz", repos = NULL) :
  installation of package ‘genomation_1.16.0.tar.gz’ had non-zero exit status

发现缺少包seqPattern，按照上述步骤手动安装该包。(这个包下载的时候也巨慢，还会报错 ，所以也要手动安装)

重新输入命令 

​
install.packages("genomation", repos=NULL) #安装包

​

 安装成功

讨论

我觉的其实换个镜像，再延长时间，应该也可以下载成功，但是我没找到R对应的.Rprofile文件，所以没办法了，只能直接手动装了。

getOption('timeout')
# [1] 60
options(timeout=100)