聚类算法4——DBSCAN密度聚类(算法步骤及matlab代码)

看了西关书的聚类算法，算法原理很容易明白，接下来就是整理成自己的理解思路，然后一步一步来实现算法，那么就来做吧。

DensityClustering算法

• 概念

从样本密度的角度考察样本之间的可连接性，样本分布的紧密程度刻画聚类结构

• 术语

核心对象：样本x_j的Δd邻域内至少包含MinPts个样本，称x_j为核心对象

密度直达：x_j邻域内的样本x_i，称x_j由x_i密度直达

密度可达：对于x_j和x_i，存在样本序列p1,p2,…pn,若p1=x_j,pn=x_i，p_i+1由p_i密度直达，x_j和x_i密度可达

密度相连：对于x_j和x_i，若存在x_k，使得x_i与x_j均由x_k密度可达，则x_j和x_i密度相连。

DBSCAN将簇定义为：由密度可达关系导出最大密度相连样本集合。

三、算法步骤

输入：样本集，邻域参数（邻域距离Δd，最小包含邻域样本个数MinPst）

输出：聚类簇划分

Step1、搜索核心对象集 search_objects()

输入：样本集D，邻域参数;输出：核心对象集

Step1.1载入数据集，初始化核心对象集、邻域参数

Step1.2 遍历样本，根据邻域参数，搜索核心对象，并添加到核心对象集合中

Setp2、密度聚类 density_clustering（）

输入：核心对象集O，样本集T = D，邻域参数

输出：聚类簇个数k，聚类簇划分集C

Step2.1初始化聚类样本簇k=0;初始化未访问样本集合T =D;

Step2.2 repeat_Objects_clustering();源源不断的对核心对象集中的元素抽取以聚类原则工作

K=0;T=D;

While O != NULL

记录当前未访问的样本集合T_old = T

随机选取一个核心对象o∈O, 初始化队列Q = < o>

T=T\{o};

While Q!=NULL

取出队列Q中的首个样本q

If q的邻域样本个数>= MinPst

Δ = q的邻域样本

Q= {Q;Δ}

T = T\Δ

End if

End while Q

K = k+1; 生成聚类簇C_k = T_old\T

O = O\C_k

End whileO

DBSCAN代码下载链接

ok啦，我选择的是最小距离聚类方法，接下来不废话上代码（Matlab发布形式）

function Main()
clc
clear
close all
%step1
melon_data = load('melon4.0.txt');
melon_data(:,1)=[];
global delta_dist;
global min_pst;
delta_dist = 0.11; min_pst = 5;
object_set = search_objects(melon_data); %ok
%step2
[k_class,cluster_set]= repeat_Objects_clustering(melon_data,object_set);%ok
show(melon_data,cluster_set);
plot(object_set(:,1),object_set(:,2),'ro',...
    'MarkerEdgeColor','k',...
    'MarkerFaceColor','g',...
    'MarkerSize',4)
fprintf('样本密度聚类个数为：%d\n',k_class);
end

subfunction

%step1
function object_set = search_objects(melon_data)
object_set = [];
for i= 1:length(melon_data)
    [is_object, ~] = core_engin(melon_data,melon_data(i,:));
   if is_object % including xi itself
       object_set = [object_set;melon_data(i,:)];
   end
end
end
%core engin
function [is_object, xi_object_samples] = core_engin(melon_data,xi_data)
% judge objects and get object samples
global delta_dist;
global min_pst;
is_object = 0;
xi_dist =  pdist2(melon_data,xi_data);
min_pst_ind= find(xi_dist<=delta_dist);
if length(min_pst_ind) >= min_pst % including xi itself
   is_object =1;
   xi_object_samples = melon_data(min_pst_ind,:);
else
    xi_object_samples =[];
end
end
%step2
function [k_class,cluster_set]= repeat_Objects_clustering(melon_data,object_set)
cluster_set.k_rows =[];
cluster_set.cluster =[];
k=0;
t_data = melon_data;
while ~isempty(object_set)
    t_old_data = t_data; % not visit smample data
    [OS_rows,~] = size(object_set);
    Q = object_set(randi(OS_rows),:);
    del_ind = search_same_data(t_data,Q);
    t_data(del_ind,:)=[];
    while ~isempty(Q)
        [is_object, xi_object_samples] = core_engin(melon_data,Q(1,:));
        if is_object %>=min_pst
            delta_sample= set_across(t_data,xi_object_samples);
            if ~isempty(delta_sample)
                Q =[Q;delta_sample];
                t_data = set_diff(t_data,delta_sample);
            end
        end
        Q(1,:)=[];
    end
 k=k+1;
 cur_cluster = set_diff(t_old_data,t_data);
 object_set = set_diff(object_set,cur_cluster);
 %store
 [cur_cluster_rows,~] = size(cur_cluster);
 cluster_set.k_rows =[cluster_set.k_rows;cur_cluster_rows];
 cluster_set.cluster =[cluster_set.cluster;cur_cluster];
end
k_class = k;
end
function output_data = set_across(act_data,pas_data)
% this function is doing output_data = act_data ∩pas_data
output_data = [];
[PD_rows,~] = size(pas_data);
for i =1:PD_rows
    delta_ind = search_same_data(act_data,pas_data(i,:));
    if ~isempty(delta_ind)
       output_data = [output_data;pas_data(i,:)];
    else
        continue;
    end
end

end

function output_data = set_diff(act_data,pas_data)
%this function is set operation  : output_data = act_data\pas_data去除操作
[m,~] = size(pas_data);
for i= 1:m
    delta_ind = search_same_data(act_data,pas_data(i,:));
    if ~isempty(delta_ind)
       act_data(delta_ind,:) =[];
    else
        continue;
    end
end
output_data = act_data;
end

function zero_ind = search_same_data(data,xi_data)
    dist = pdist2(data,xi_data);
    zero_ind = find(dist==0);
end


function show(melon_data,cluster_set)
plot(melon_data(:,1),melon_data(:,2),'+b');
hold on
cum_rows = cumsum(cluster_set.k_rows);
plot(cluster_set.cluster(1:cum_rows(1),1),cluster_set.cluster(1:cum_rows(1),2),'or');
plot(cluster_set.cluster(cum_rows(1)+1:cum_rows(2),1),cluster_set.cluster(cum_rows(1)+1:cum_rows(2),2),'sg');
plot(cluster_set.cluster(cum_rows(2)+1:cum_rows(3),1),cluster_set.cluster(cum_rows(2)+1:cum_rows(3),2),'^k');
plot(cluster_set.cluster(cum_rows(3)+1:end,1),cluster_set.cluster(cum_rows(3)+1:end,2),'pm');
xlabel('density');ylabel('sugar rate');
end

样本密度聚类个数为：4