ubuntu20.10报错问题

ubuntu20.10报错问题
container error: cgroup subsystem devices not found

https://blog.csdn.net/Raink_LH/article/details/109595717
https://cloud.tencent.com/developer/article/1853467
https://blog.csdn.net/qq_38747027/article/details/120817248
https://www.jianshu.com/p/c03044dbeaaf

curl -fsSL https://mirrors.ustc.edu.cn/docker-ce/linux/ubuntu/gpg | sudo apt-key add - 9DC8 5822 9FC7 DD38 854A E2D8 8D81 803C 0EBF CD88

GRUB_CMDLINE_LINUX_DEFAULT=“quiet systemd.unified_cgroup_hierarchy=0”

sudo docker run --rm --gpus all nvidia/cuda:11.0-base nvidia-smi

sudo docker run --rm --gpus all nvidia/cuda:11.5-base nvidia-smi

alphafold_path="/home/zhulab/alpha/alphafold"

wget -q -P /home/zhulab/alpha/alphafold/alphafold/common https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c63615b64735c4941278d92b554ec94415f8/modules/mol/alg/src/stereo_chemical_props.txt

pip install absl-py0.13.0 biopython1.79 chex0.0.7 dm-haiku0.0.4 dm-tree0.1.6 immutabledict2.0.0 jax0.2.14 ml-collections0.1.0 numpy1.19.5 scipy1.7.0 tensorflow2.5.0 pandas1.3.4 tensorflow-cpu==2.5.0

pip install --upgrade jax jaxlib==0.1.69+cuda111 -f https://storage.googleapis.com/jax-releases/jax_releases.html

alphafold_path="/home/zhulab/alpha/alphafold"
cd ~/anaconda3/envs/alphafold/lib/python3.8/site-packages/ && patch -p0 < $alphafold_path/docker/openmm.patch

or

cd ~/miniconda3/envs/alphafold/lib/python3.8/site-packages/ && patch -p0 < $alphafold_path/docker/openmm.patch

sudo apt-get install nvidia-docker2
sudo systemctl restart docker

sudo docker run hello-world

export PATH="/usr/local/cuda-11/bin:$PATH"

export LD_LIBRARY_PATH="/usr/local/cuda-11/lib64:$LD_LIBRARY_PATH"
sudo docker run --rm --gpus all nvidia/cuda:11.0-base nvidia-smi

sudo service docker stop

sudo apt-get autoremove docker docker-ce docker-engine docker.io containerd runc

sudo rm -rf /etc/systemd/system/docker.service.d
sudo rm -rf /var/lib/docker

curl -s -L https://nvidia.github.io/nvidia-docker/gpgkey |
sudo apt-key add -
distribution=$(. /etc/os-release;echo $ID20.04)curl-s-Lhttps://nvidia.github.io/nvidia-docker/$distribution/nvidia-docker.list |
sudo tee /etc/apt/sources.list.d/nvidia-docker.list
sudo apt-get update
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版权声明：本文为CSDN博主「luckyforefforts」的原创文章，遵循CC 4.0 BY-SA版权协议，转载请附上原文出处链接及本声明。
原文链接：https://blog.csdn.net/qq_38747027/article/details/120817248

sudo apt-get autoremove nvidia-docker*

sudo apt-get install nvidia-container-runtime
systemctl restart docker #重启docker

pip install jax==0.2.14

pip install --upgrade jax jaxlib==0.1.69+cuda111 -f https://storage.googleapis.com/jax-releases/jax_releases.html

sudo ln -sf /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_adv_train.so.8.0.1 /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_adv_train.so.8
sudo ln -sf /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_ops_infer.so.8.0.1 /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_ops_infer.so.8
sudo ln -sf /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_cnn_train.so.8.0.1 /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_cnn_train.so.8
sudo ln -sf /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_adv_infer.so.8.0.1 /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_adv_infer.so.8
sudo ln -sf /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_ops_train.so.8.0.1 /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_ops_train.so.8
sudo ln -sf /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_cnn_infer.so.8.0.1 /usr/local/cuda-11.1/targets/x86_64-linux/lib/libcudnn_cnn_infer.so.8
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版权声明：本文为CSDN博主「qq_39096302」的原创文章，遵循CC 4.0 BY-SA版权协议，转载请附上原文出处链接及本声明。
原文链接：https://blog.csdn.net/qq_39096302/article/details/116494406

sudo ln -sf /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_adv_infer.so.8 /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_adv_infer.so.8.3.1

sudo ln -sf /usr/local/cuda/targets/x86_64-linux/lib/libcudnn.so.8 /usr/local/cuda/targets/x86_64-linux/lib/libcudnn.so.8.3.1

sudo ln -sf /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_ops_train.so.8 /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_ops_train.so.8.3.1

sudo ln -sf /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_ops_infer.so.8 /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_ops_infer.so.8.3.1

sudo ln -sf /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_adv_train.so.8 /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_adv_train.so.8.3.1

sudo ln -sf /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_cnn_train.so.8 /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_cnn_train.so.8.3.1

sudo ln -sf /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_cnn_infer.so.8 /usr/local/cuda/targets/x86_64-linux/lib/libcudnn_cnn_infer.so.8.3.1

container error: cgroup subsystem devices not found

https://blog.csdn.net/Raink_LH/article/details/109595717
https://cloud.tencent.com/developer/article/1853467
https://blog.csdn.net/qq_38747027/article/details/120817248
https://www.jianshu.com/p/c03044dbeaaf