医疗领域实体对齐（实体链接）论文总结

2002

Pakhomov, Serguei. "Semi-supervised maximum entropy based approach to acronym and abbreviation normalization in medical texts." Proceedings of the 40th annual meeting on association for computational linguistics. Association for Computational Linguistics, 2002. 被引用次数：136

[paper]

2013

Leaman, Robert, Rezarta Islamaj Doğan, and Zhiyong Lu. "DNorm: disease name normalization with pairwise learning to rank." Bioinformatics 29.22 (2013): 2909-2917. 被引用次数：237

[paper]

[论文笔记]

2014

Doğan, Rezarta Islamaj, Robert Leaman, and Zhiyong Lu. "NCBI disease corpus: a resource for disease name recognition and concept normalization." Journal of biomedical informatics 47 (2014): 1-10.  被引用次数：159

[paper]

2015

Lee, Hsin-Chun, Yi-Yu Hsu, and Hung-Yu Kao. "An enhanced CRF-based system for disease name entity recognition and normalization on BioCreative V DNER Task." Proceedings of the fifth biocreative challenge evaluation workshop. 2015.  被引用次数：19

[paper]

D’Souza, Jennifer, and Vincent Ng. "Sieve-based entity linking for the biomedical domain." Proceedings of the 53rd Annual Meeting of the Association for Computational Linguistics and the 7th International Joint Conference on Natural Language Processing (Volume 2: Short Papers). 2015.  被引用次数：23

[paper]

Leaman, Robert, Chih-Hsuan Wei, and Zhiyong Lu. "tmChem: a high performance approach for chemical named entity recognition and normalization." Journal of cheminformatics 7.1 (2015): S3. 被引用次数：146

[paper]

2016

Leaman, Robert, and Zhiyong Lu. "TaggerOne: joint named entity recognition and normalization with semi-Markov Models." Bioinformatics 32.18 (2016): 2839-2846.  被引用次数：89

[paper]

Lee, Hsin-Chun, Yi-Yu Hsu, and Hung-Yu Kao. "AuDis: an automatic CRF-enhanced disease normalization in biomedical text." Database 2016 (2016).  被引用次数：10

[paper]

2017

Cho, Hyejin, Wonjun Choi, and Hyunju Lee. "A method for named entity normalization in biomedical articles: application to diseases and plants." BMC bioinformatics 18.1 (2017): 451.  被引用次数：7

[paper]

Wang, Meng, et al. "Pdd graph: Bridging electronic medical records and biomedical knowledge graphs via entity linking." International Semantic Web Conference. Springer, Cham, 2017. 被引用次数：8

[paper]

Li, Haodi, et al. "CNN-based ranking for biomedical entity normalization." BMC bioinformatics 18.11 (2017): 385. 被引用次数：11

[paper]

2018 

Nguyen, Thanh Ngan, Minh Trang Nguyen, and Thanh Hai Dang. Disease Named Entity Normalization Using Pairwise Learning To Rank and Deep Learning. VNU University of Engineering and Technology, 2018. 被引用次数：1

[paper]

主要思想：模型结构如下图，首先进行预处理，去除标点，大小写，词干化处理（stemming），然后使用Abbreviation Plus Pseudo-Precision (Ab3P)工具对缩写进行改写，再进行字典匹配（字典使用Comparative Toxicogenomics Database project (CTD)），如果字典没有匹配上，使用pair-wise CNN对候选集进行打分，其中CNN使用word-level和character-level信息。在数据集BioCreative V Chemical Disease Relation (BC5 CDR)和NCBI Disease上实验表明，这个模型性能高于baseline。

Luo, Yi, et al. "Multi-task medical concept normalization using multi-view convolutional neural network." Thirty-Second AAAI Conference on Artificial Intelligence. 2018.  被引用次数：2

[paper]

2019

Medical Entity Linking using Triplet Network 

[paper]

[论文笔记]

2020

A Lightweight Neural Model for Biomedical Entity Linking

[paper]

[论文笔记]