我使用余弦相似性在我的数据集上执行TSNE有一个小问题.
我已经计算了所有向量的余弦相似度,所以我有一个包含余弦相似度的方阵:
A = [[ 1 0.7 0.5 0.6 ]
[ 0.7 1 0.3 0.4 ]
[ 0.5 0.3 1 0.1 ]
[ 0.6 0.4 0.1 1 ]]
然后,我正在使用TSNE:
A = np.matrix([[1, 0.7,0.5,0.6],[0.7,1,0.3,0.4],[0.5,0.3,1,0.1],[0.6,0.4,0.1,1]])
model = manifold.TSNE(metric="precomputed")
Y = model.fit_transform(A)
但我不确定使用预先计算的度量标准来保持我的余弦相似度:
#[documentation][1]
If metric is “precomputed”, X is assumed to be a distance matrix
但是当我尝试使用余弦指标时,我收到了一个错误:
A = np.matrix([[1, 0.7,0.5,0.6],[0.7,1,0.3,0.4],[0.5,0.3,1,0.1],[0.6,0.4,0.1,1]])
model = manifold.TSNE(metric="cosine")
Y = model.fit_transform(A)
raise ValueError("All distances should be positive, either "
ValueError: All distances should be positive, either the metric or
precomputed distances given as X are not correct
所以我的问题是,如何在现有数据集(相似度矩阵)上使用余弦度量来执行TSNE?