wget https://repo.anaconda.com/miniconda/Miniconda3-4.5.4-Linux-x86_64.sh
./Miniconda3-4.5.4-Linux-x86_64.sh -b -p venv
source venv/bin/activate
pip install --upgrade pip第1部分
pip install typing_extensions
pip download torch==1.9.1+cu111 torchvision==0.10.1+cu111 torchaudio==0.9.1 -f https://download.pytorch.org/whl/torch_stable.html
pip install torch==1.9.1+cu111 torchvision==0.10.1+cu111 torchaudio==0.9.1 -f https://download.pytorch.org/whl/torch_stable.html
pip install https://data.dgl.ai/wheels/dgl_cu111-0.7.1-cp36-cp36m-manylinux1_x86_64.whl
(base) [root@docker venv]# pip download torch==1.9.1+cu111 torchvision==0.10.1+cu111 torchaudio==0.9.1 -f https://download.pytorch.org/whl/torch_stable.html
Looking in links: https://download.pytorch.org/whl/torch_stable.html
Collecting torch==1.9.1+cu111
Using cached https://download.pytorch.org/whl/cu111/torch-1.9.1%2Bcu111-cp36-cp36m-linux_x86_64.whl (2041.3 MB)
Collecting torchvision==0.10.1+cu111
Using cached https://download.pytorch.org/whl/cu111/torchvision-0.10.1%2Bcu111-cp36-cp36m-linux_x86_64.whl (20.6 MB)
Collecting torchaudio==0.9.1
Using cached torchaudio-0.9.1-cp36-cp36m-manylinux1_x86_64.whl (1.9 MB)
Collecting typing-extensions
Using cached https://download.pytorch.org/whl/typing_extensions-4.8.0-py3-none-any.whl (31 kB)
Collecting dataclasses
Downloading dataclasses-0.8-py3-none-any.whl (19 kB)
Collecting pillow>=5.3.0
Downloading Pillow-8.4.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB)
|████████████████████████████████| 3.1 MB 76 kB/s
Collecting numpy
Downloading numpy-1.19.5-cp36-cp36m-manylinux2010_x86_64.whl (14.8 MB)
|████████████████████████████████| 14.8 MB 77 kB/s
Collecting typing-extensions
Downloading https://download.pytorch.org/whl/typing_extensions-4.4.0-py3-none-any.whl (26 kB)
Using cached typing_extensions-4.1.1-py3-none-any.whl (26 kB)
Saved ./torch-1.9.1+cu111-cp36-cp36m-linux_x86_64.whl
Saved ./torchvision-0.10.1+cu111-cp36-cp36m-linux_x86_64.whl
Saved ./torchaudio-0.9.1-cp36-cp36m-manylinux1_x86_64.whl
Saved ./Pillow-8.4.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Saved ./dataclasses-0.8-py3-none-any.whl
Saved ./numpy-1.19.5-cp36-cp36m-manylinux2010_x86_64.whl
Saved ./typing_extensions-4.1.1-py3-none-any.whl
Successfully downloaded torch torchvision torchaudio pillow dataclasses numpy typing-extensions
(base) [root@docker venv]# pip install torch==1.9.1+cu111 torchvision==0.10.1+cu111 torchaudio==0.9.1 -f https://download.pytorch.org/whl/torch_stable.html
Looking in links: https://download.pytorch.org/whl/torch_stable.html
Collecting torch==1.9.1+cu111
Using cached https://download.pytorch.org/whl/cu111/torch-1.9.1%2Bcu111-cp36-cp36m-linux_x86_64.whl (2041.3 MB)
Collecting torchvision==0.10.1+cu111
Using cached https://download.pytorch.org/whl/cu111/torchvision-0.10.1%2Bcu111-cp36-cp36m-linux_x86_64.whl (20.6 MB)
Collecting torchaudio==0.9.1
Using cached torchaudio-0.9.1-cp36-cp36m-manylinux1_x86_64.whl (1.9 MB)
Collecting dataclasses
Using cached dataclasses-0.8-py3-none-any.whl (19 kB)
Requirement already satisfied: typing-extensions in ./venv/lib/python3.6/site-packages (from torch==1.9.1+cu111) (4.1.1)
Collecting pillow>=5.3.0
Using cached Pillow-8.4.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB)
Collecting numpy
Using cached numpy-1.19.5-cp36-cp36m-manylinux2010_x86_64.whl (14.8 MB)
Installing collected packages: dataclasses, torch, pillow, numpy, torchvision, torchaudio
Successfully installed dataclasses-0.8 numpy-1.19.5 pillow-8.4.0 torch-1.9.1+cu111 torchaudio-0.9.1 torchvision-0.10.1+cu111
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
(base) [root@docker venv]# pip list
Package Version
----------------- ------------
asn1crypto 0.24.0
certifi 2018.4.16
cffi 1.11.5
chardet 3.0.4
conda 4.5.4
cryptography 2.2.2
dataclasses 0.8
idna 2.6
numpy 1.19.5
Pillow 8.4.0
pip 21.3.1
pycosat 0.6.3
pycparser 2.18
pyOpenSSL 18.0.0
PySocks 1.6.8
requests 2.18.4
ruamel_yaml 0.15.37
setuptools 39.2.0
six 1.11.0
torch 1.9.1+cu111
torchaudio 0.9.1
torchvision 0.10.1+cu111
typing_extensions 4.1.1
urllib3 1.22
wheel 0.31.1
(base) [root@docker venv]#
(base) [root@docker venv]# pip install https://data.dgl.ai/wheels/dgl_cu111-0.7.1-cp36-cp36m-manylinux1_x86_64.whl
Collecting dgl-cu111==0.7.1
Downloading https://data.dgl.ai/wheels/dgl_cu111-0.7.1-cp36-cp36m-manylinux1_x86_64.whl (164.8 MB)
|████████████████████████████████| 164.8 MB 25 kB/s
Collecting requests>=2.19.0
Downloading requests-2.27.1-py2.py3-none-any.whl (63 kB)
|████████████████████████████████| 63 kB 417 kB/s
Collecting scipy>=1.1.0
Downloading scipy-1.5.4-cp36-cp36m-manylinux1_x86_64.whl (25.9 MB)
|████████████████████████████████| 25.9 MB 69 kB/s
Collecting networkx>=2.1
Downloading networkx-2.5.1-py3-none-any.whl (1.6 MB)
|████████████████████████████████| 1.6 MB 48 kB/s
Requirement already satisfied: numpy>=1.14.0 in ./venv/lib/python3.6/site-packages (from dgl-cu111==0.7.1) (1.19.5)
Collecting decorator<5,>=4.3
Downloading decorator-4.4.2-py2.py3-none-any.whl (9.2 kB)
Collecting charset-normalizer~=2.0.0
Downloading charset_normalizer-2.0.12-py3-none-any.whl (39 kB)
Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.6/site-packages (from requests>=2.19.0->dgl-cu111==0.7.1) (2018.4.16)
Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.6/site-packages (from requests>=2.19.0->dgl-cu111==0.7.1) (2.6)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in ./venv/lib/python3.6/site-packages (from requests>=2.19.0->dgl-cu111==0.7.1) (1.22)
Installing collected packages: decorator, charset-normalizer, scipy, requests, networkx, dgl-cu111
Attempting uninstall: requests
Found existing installation: requests 2.18.4
Uninstalling requests-2.18.4:
Successfully uninstalled requests-2.18.4
Successfully installed charset-normalizer-2.0.12 decorator-4.4.2 dgl-cu111-0.7.1 networkx-2.5.1 requests-2.27.1 scipy-1.5.4
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
(base) [root@docker venv]#第2部分
jupyter
pandas
transformers
arrow
xlrd
fastjsonschema
gitdb
pip install jupyter -i https://pypi.tuna.tsinghua.edu.cn/simple
Installing collected packages: zipp, ipython-genutils, traitlets, pyrsistent, importlib-metadata, attrs, wcwidth, tornado, pyzmq, python-dateutil, pyparsing, ptyprocess, parso, nest-asyncio, jupyter-core, jsonschema, entrypoints, webencodings, pygments, prompt-toolkit, pickleshare, pexpect, packaging, nbformat, MarkupSafe, jupyter-client, jedi, backcall, async-generator, testpath, pandocfilters, nbclient, mistune, jupyterlab-pygments, jinja2, ipython, defusedxml, bleach, argon2-cffi-bindings, terminado, Send2Trash, prometheus-client, nbconvert, ipykernel, argon2-cffi, notebook, widgetsnbextension, qtpy, jupyterlab-widgets, comm, qtconsole, jupyter-console, ipywidgets, jupyter
Successfully installed MarkupSafe-2.0.1 Send2Trash-1.8.2 argon2-cffi-21.3.0 argon2-cffi-bindings-21.2.0 async-generator-1.10 attrs-22.2.0 backcall-0.2.0 bleach-4.1.0 comm-0.1.4 defusedxml-0.7.1 entrypoints-0.4 importlib-metadata-4.8.3 ipykernel-5.5.6 ipython-7.16.3 ipython-genutils-0.2.0 ipywidgets-7.8.1 jedi-0.17.2 jinja2-3.0.3 jsonschema-3.2.0 jupyter-1.0.0 jupyter-client-7.1.2 jupyter-console-6.4.3 jupyter-core-4.9.2 jupyterlab-pygments-0.1.2 jupyterlab-widgets-1.1.7 mistune-0.8.4 nbclient-0.5.9 nbconvert-6.0.7 nbformat-5.1.3 nest-asyncio-1.6.0 notebook-6.4.10 packaging-21.3 pandocfilters-1.5.1 parso-0.7.1 pexpect-4.9.0 pickleshare-0.7.5 prometheus-client-0.17.1 prompt-toolkit-3.0.36 ptyprocess-0.7.0 pygments-2.14.0 pyparsing-3.0.7 pyrsistent-0.18.0 python-dateutil-2.9.0.post0 pyzmq-25.1.2 qtconsole-5.2.2 qtpy-2.0.1 terminado-0.12.1 testpath-0.6.0 tornado-6.1 traitlets-4.3.3 wcwidth-0.2.13 webencodings-0.5.1 widgetsnbextension-3.6.6 zipp-3.6.0
pip install pandas -i https://pypi.tuna.tsinghua.edu.cn/simple
Installing collected packages: pytz, pandas
Successfully installed pandas-1.1.5 pytz-2024.1
pip install transformers -i https://pypi.tuna.tsinghua.edu.cn/simple
Installing collected packages: importlib-resources, tqdm, regex, pyyaml, joblib, filelock, click, tokenizers, sacremoses, huggingface-hub, transformers
Successfully installed click-8.0.4 filelock-3.4.1 huggingface-hub-0.4.0 importlib-resources-5.4.0 joblib-1.1.1 pyyaml-6.0.1 regex-2023.8.8 sacremoses-0.0.53 tokenizers-0.12.1 tqdm-4.64.1 transformers-4.18.0
pip install arrow -i https://pypi.tuna.tsinghua.edu.cn/simple
Installing collected packages: arrow
Successfully installed arrow-1.2.3
pip install xlrd -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed xlrd-2.0.1
pip install fastjsonschema -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed fastjsonschema-2.19.1
pip install gitdb -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed gitdb-4.0.9 smmap-5.0.0第3部分
sentencepiece
sniffio
stack-data
termcolor
tzdata
yarl
wrapt
pip install sentencepiece -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed sentencepiece-0.2.0
pip install sniffio -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed contextvars-2.4 immutables-0.19 sniffio-1.2.0
pip install stack-data -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed asttokens-2.4.1 executing-2.0.1 pure-eval-0.2.2 six-1.16.0 stack-data-0.6.3
pip install termcolor -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed termcolor-1.1.0
pip install tzdata -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed tzdata-2024.1
pip install yarl -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed multidict-5.2.0 yarl-1.7.2
pip install wrapt -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed wrapt-1.16.0
第4部分
tinycss2
soupsieve
sentence-transformers
rfc3339-validator
rfc3986-validator
pytorch-lightning
python-json-logger
opt-einsum
notebook-shim
nbclassic
matplotlib
matplotlib-inline
pip install tinycss2 soupsieve -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed soupsieve-2.3.2.post1 tinycss2-1.1.1
pip install sentence-transformers -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed nltk-3.6.7 sentence-transformers-2.2.2
pip install rfc3339-validator rfc3986-validator -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed rfc3339-validator-0.1.4 rfc3986-validator-0.1.1
pip install pytorch-lightning python-json-logger -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed aiohttp-3.8.6 aiosignal-1.2.0 async-timeout-4.0.2 asynctest-0.13.0 frozenlist-1.2.0 fsspec-2022.1.0 future-1.0.0 idna-ssl-1.1.0 pyDeprecate-0.3.1 python-json-logger-2.0.7 pytorch-lightning-1.5.10 setuptools-59.5.0
pip install opt-einsum notebook-shim nbclassic -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed opt-einsum-3.3.0
Successfully installed anyio-3.6.2 idna-3.6 jupyter-server-1.13.1 notebook-shim-0.0.5
Successfully installed nbclassic-0.3.5
pip install matplotlib matplotlib-inline -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed cycler-0.11.0 kiwisolver-1.3.1 matplotlib-3.3.4
Successfully installed matplotlib-inline-0.1.6
第5部分
tensorboardX
protobuf
tensorflow-estimator
keras-nightly
Keras-Preprocessing
astunparse
beautifulsoup4
debugpy
flatbuffers
fonttools
fqdn
gast
google-pasta
h5py
jsonpointer
InstructorEmbedding
pip install tensorboardX -i https://pypi.tuna.tsinghua.edu.cn/simple
pip install tensorboardX protobuf==3.19.6 -i https://pypi.tuna.tsinghua.edu.cn/simple 注：protobuf==3.19.6 指定具体版本，解决冲突
Successfully installed protobuf-3.19.6 tensorboardX-2.6
pip install tensorflow-estimator -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed tensorflow-estimator-2.8.0
pip install keras-nightly Keras-Preprocessing -i https://pypi.tuna.tsinghua.edu.cn/simple
pip install keras-nightly Keras-Preprocessing okok
Successfully installed Keras-Preprocessing-1.1.2 keras-nightly-2.11.0.dev2022092207
pip install astunparse beautifulsoup4 debugpy flatbuffers fonttools fqdn gast google-pasta h5py jsonpointer -i https://pypi.tuna.tsinghua.edu.cn/simple
Installing collected packages: cached-property, jsonpointer, h5py, google-pasta, gast, fqdn, fonttools, flatbuffers, debugpy, beautifulsoup4, astunparse
Successfully installed astunparse-1.6.3 beautifulsoup4-4.12.3 cached-property-1.5.2 debugpy-1.5.1 flatbuffers-24.3.7 fonttools-4.27.1 fqdn-1.5.1 gast-0.5.4 google-pasta-0.2.0 h5py-3.1.0 jsonpointer-2.3
pip install InstructorEmbedding -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed InstructorEmbedding-1.0.1第6部分
jupyter-events
jupyter_server_terminals
contourpy
isoduration
lightning-utilities
tensorflow-gpu
safetensors
pip install jupyter-events -i https://pypi.tuna.tsinghua.edu.cn/simple
pip install jupyter_server_terminals -i https://pypi.tuna.tsinghua.edu.cn/simple
ERROR: Could not find a version that satisfies the requirement jupyter-events (from versions: none)
ERROR: Could not find a version that satisfies the requirement jupyter_server_terminals (from versions: none)
问题分析：
jupyter-events==0.6.3 Released: Jan 13, 2023 Requires: Python >=3.7
jupyter-events==0.1.0 Released: May 31, 2022 Requires: Python >=3.7
jupyter-server-terminals==0.4.4 Released: Jan 9, 2023 Requires: Python >=3.8
jupyter-server-terminals==0.1.0 Released: Apr 3, 2022 Requires: Python >=3.7
pip install contourpy isoduration
ERROR: Could not find a version that satisfies the requirement contourpy (from versions: none)
ERROR: Could not find a version that satisfies the requirement isoduration (from versions: none)
问题分析：
contourpy==0.0.1 Released: Sep 21, 2021 Requires: Python >=3.7
isoduration==20.11.0 Released: Nov 1, 2020 Requires: Python >=3.7
pip install lightning-utilities
ERROR: Could not find a version that satisfies the requirement lightning-utilities (from versions: none)
ERROR: No matching distribution found for lightning-utilities
问题分析：
lightning-utilities==0.9.0 Released: Jun 30, 2023 Requires: Python >=3.7
lightning-utilities==0.2.0 Released: Sep 6, 2022 Requires: Python >=3.7
pip install tensorflow-gpu -i https://pypi.tuna.tsinghua.edu.cn/simple
报错：
=========================================================
The "tensorflow-gpu" package has been removed!
Please install "tensorflow" instead.
Other than the name, the two packages have been identical
since TensorFlow 2.1, or roughly since Sep 2019. For more
information, see: pypi.org/project/tensorflow-gpu
=========================================================
pip install safetensors -i https://pypi.tuna.tsinghua.edu.cn/simple
报错：
error: can't find Rust compiler 暂未解决
safetensors==0.4.0 Requires: Python >=3.7第7部分
torchmetrics
tensorboard
torch-geometric
websocket-client
webcolors
wandb
uri-template
pip install torchmetrics
Installing collected packages: pyDeprecate, torchmetrics
Successfully installed pyDeprecate-0.3.2 torchmetrics-0.8.2
pip install tensorboard -i https://pypi.tuna.tsinghua.edu.cn/simple
Installing collected packages: pyasn1, rsa, pyasn1-modules, oauthlib, cachetools, requests-oauthlib, google-auth, werkzeug, tensorboard-plugin-wit, tensorboard-data-server, setuptools, protobuf, markdown, grpcio, google-auth-oauthlib, absl-py, tensorboard
Attempting uninstall: setuptools
Found existing installation: setuptools 39.2.0
Uninstalling setuptools-39.2.0:
Successfully uninstalled setuptools-39.2.0
Successfully installed absl-py-1.4.0 cachetools-4.2.4 google-auth-2.22.0 google-auth-oauthlib-0.4.6 grpcio-1.48.2 markdown-3.3.7 oauthlib-3.2.2 protobuf-3.19.6 pyasn1-0.5.1 pyasn1-modules-0.3.0 requests-oauthlib-1.4.0 rsa-4.9 setuptools-59.6.0 tensorboard-2.10.1 tensorboard-data-server-0.6.1 tensorboard-plugin-wit-1.8.1 werkzeug-2.0.3
pip install torch-geometric -i https://pypi.tuna.tsinghua.edu.cn/simple
Installing collected packages: threadpoolctl, isodate, yacs, scikit-learn, rdflib, googledrivedownloader, torch-geometric
Successfully installed googledrivedownloader-0.4 isodate-0.6.1 rdflib-5.0.0 scikit-learn-0.24.2 threadpoolctl-3.1.0 torch-geometric-2.0.3 yacs-0.1.8
pip install websocket-client webcolors wandb uri-template -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed GitPython-3.1.18 appdirs-1.4.4 docker-pycreds-0.4.0 pathtools-0.1.2 psutil-5.9.8 sentry-sdk-1.43.0 setproctitle-1.2.3 uri-template-1.2.0 urllib3-1.26.18 wandb-0.15.12 webcolors-1.11.1 websocket-client-1.3.1
第8部分
torch-sparse
torch-scatter
pip install torch-sparse -i https://pypi.tuna.tsinghua.edu.cn/simple
Successfully installed torch-sparse-0.6.12
注：torch_sparse-0.6.12.tar.gz torch-sparse 安装需要一定时间
pip install torch-scatter -i https://pypi.tuna.tsinghua.edu.cn/simple
报错：
subprocess.CalledProcessError: Command '['which', 'g++-7']' returned non-zero exit status 1.
(base) [root@docker venv]# pip install torch-scatter
Collecting torch-scatter
Using cached torch_scatter-2.0.9.tar.gz (21 kB)
Preparing metadata (setup.py) ... done
Building wheels for collected packages: torch-scatter
Building wheel for torch-scatter (setup.py) ... done
Created wheel for torch-scatter: filename=torch_scatter-2.0.9-cp36-cp36m-linux_x86_64.whl size=279609 sha256=a05d2afc6b3919d03f19c1f3688c27ba6e56495ad18ac8f8820c8ea1efe97eb5
Stored in directory: /root/.cache/pip/wheels/48/f1/07/fe02c3b61f43390870ff365ee2a1d690c2becf263ab3328273
Successfully built torch-scatter
Installing collected packages: torch-scatter
Successfully installed torch-scatter-2.0.9
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
(base) [root@docker venv]#
已解决：
centOS默认自带4点几版本的gcc 、g++编译器，是比较老的版本的 gcc version 4.8.5# yum install centos-release-scl
安装 devtoolset-7，这个包含g++ 7的软件集：
# yum install devtoolset-7
启用 devtoolset-7 环境
# scl enable devtoolset-7 bash
验证g++版本
# g++ --version
g++ (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5)
Copyright (C) 2017 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.# which g++
/opt/rh/devtoolset-7/root/usr/bin/g++# cp /opt/rh/devtoolset-7/root/usr/bin/g++ /opt/rh/devtoolset-7/root/usr/bin/g++-7
# which g++-7
/opt/rh/devtoolset-7/root/usr/bin/g++-7在CentOS系统上安装g++-7，你可以使用Software Collections (SCL) repository。
注：
上述命令会启动一个新的shell，在这个shell中，g++的版本将会是7.x.x。如果你想要在任何新的shell中都保持这个版本，你可以在启用devtoolset-7后将g++的符号链接到正确的版本
ln -s /opt/rh/devtoolset-7/root/usr/bin/g++ /usr/bin/g++
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