光谱双聚算法————SpectralBiclustering


import numpy as np
from matplotlib import pyplot as plt

from sklearn.datasets import make_checkerboard
from sklearn.datasets import samples_generator as sg
from sklearn.cluster.bicluster import SpectralBiclustering
from sklearn.metrics import consensus_score

n_clusters = (4, 3)
data, rows, columns = make_checkerboard(
    shape=(300, 300), n_clusters=n_clusters, noise=10,
    shuffle=False, random_state=0)

plt.matshow(data, cmap=plt.cm.Blues)
plt.title("Original dataset")

data, row_idx, col_idx = sg._shuffle(data, random_state=0)
plt.matshow(data, cmap=plt.cm.Blues)
plt.title("Shuffled dataset")

model = SpectralBiclustering(n_clusters=n_clusters, method='log',
                             random_state=0)
model.fit(data)
score = consensus_score(model.biclusters_,
                        (rows[:, row_idx], columns[:, col_idx]))

print("consensus score: {:.1f}".format(score))

fit_data = data[np.argsort(model.row_labels_)]
fit_data = fit_data[:, np.argsort(model.column_labels_)]

plt.matshow(fit_data, cmap=plt.cm.Blues)
plt.title("After biclustering; rearranged to show biclusters")

plt.matshow(np.outer(np.sort(model.row_labels_) + 1,
                     np.sort(model.column_labels_) + 1),
            cmap=plt.cm.Blues)
plt.title("Checkerboard structure of rearranged data")

plt.show()

在这里面, 有数据产生,以及如何使用scikit-learn来处理。有个过程, 我觉得可以搜到这个关键词,代码基本上不是问题了

以下是一个简单的双聚类的散点搜索算法的示例代码,以用于解释算法的基本实现过程。请注意,这只是一个示例代码,具体的实现可能会有所不同,取决于你所使用的编程语言和数据集。 ```python import numpy as np # 定义适应度函数,这里使用均方误差作为适应度函数 def fitness_func(data, row_clusters, col_clusters): # 计算双聚类的均方误差 bicluster_data = data[row_clusters][:, col_clusters] mse = np.mean((bicluster_data - np.mean(bicluster_data))**2) return mse # 初始化候选解集合 def initialize_candidates(num_candidates, num_rows, num_cols): candidates = [] for _ in range(num_candidates): row_clusters = np.random.randint(0, 2, size=num_rows) col_clusters = np.random.randint(0, 2, size=num_cols) candidates.append((row_clusters, col_clusters)) return candidates # 选择候选解 def select_candidates(candidates, num_parents): sorted_candidates = sorted(candidates, key=lambda x: x[1]) parents = sorted_candidates[:num_parents] return parents # 生成新的候选解 def generate_candidates(parents, num_offspring): offspring = [] for _ in range(num_offspring): parent1, parent2 = np.random.choice(parents, size=2) row_clusters = parent1[0].copy() col_clusters = parent2[1].copy() # 进行交叉操作 crossover_point = np.random.randint(1, len(row_clusters) - 1) row_clusters[crossover_point:] = parent2[0][crossover_point:] # 进行变异操作 mutation_rate = 0.1 # 变异率 for i in range(len(col_clusters)): if np.random.rand() < mutation_rate: col_clusters[i] = 1 - col_clusters[i] offspring.append((row_clusters, col_clusters)) return offspring # 双聚类的散点搜索算法 def scatter_search(data, num_candidates, num_parents, num_offspring, max_iterations): num_rows, num_cols = data.shape # 初始化候选解集合 candidates = initialize_candidates(num_candidates, num_rows, num_cols) best_solution = None best_fitness = float('inf') for i in range(max_iterations): for candidate in candidates: row_clusters, col_clusters = candidate # 计算适应度 fitness = fitness_func(data, row_clusters, col_clusters) # 更新最优解 if fitness < best_fitness: best_fitness = fitness best_solution = candidate # 选择候选解 parents = select_candidates(candidates, num_parents) # 生成新的候选解 offspring = generate_candidates(parents, num_offspring) # 更新候选解集合 candidates = parents + offspring return best_solution # 示例使用 data = np.random.rand(100, 50) # 样本数据,大小为100x50 num_candidates = 10 # 候选解数量 num_parents = 2 # 每次选择的父代数量 num_offspring = 8 # 每次生成的子代数量 max_iterations = 50 # 最大迭代次数 best_solution = scatter_search(data, num_candidates, num_parents, num_offspring, max_iterations) print("Best solution:", best_solution) ``` 请注意,上述代码仅为示例,可能需要进行适当的修改和调整以适应实际问题和数据集。你可以根据自己的需求进行参数设置、适应度函数的定义和其他算法细节的调整。希望这个示例能帮助你理解双聚类的散点搜索算法的基本实现过程。
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