FreeSurfer预处理命令

比如将/source/kernel.tgz解压到 /source/linux-2.6.29 目录
tar zxvf /source/kernel.tgz -C /source/ linux-2.6.29
tar zxvf /home/tj/application/freesurfer/subjects/mindboggle/OASIS-TRT-20-1.tar.gz -C /home/tj/application/freesurfer/subjects

(1)lh.thickness
mri_surf2surf --srcsubject OASIS-TRT-20-1 --sval thickness --src_type curv --trgsubject fsaverage5 --trgsurfval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/thickness --trg_type curv --hemi lh

mri_surf2surf --srcsubject /3.11/HLN-12-2 --sval thickness --src_type curv --trgsubject fsaverage5 --trgsurfval /home/student8/application/freesurfer/subjects/3.11/mintemplate/HLN/thickness --trg_type curv --hemi lh

(2)lh.area
mri_surf2surf --srcsubject OASIS-TRT-20-1 --sval area --src_type curv --trgsubject fsaverage5 --trgsurfval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/area --trg_type curv --hemi lh

(3)lh.sulc
mri_surf2surf --srcsubject OASIS-TRT-20-1 --sval sulc --src_type curv --trgsubject fsaverage5 --trgsurfval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/sulc --trg_type curv --hemi lh

(4)lh.curv
mri_surf2surf --srcsubject OASIS-TRT-20-1 --sval curv --src_type curv --trgsubject fsaverage5 --trgsurfval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/curv --trg_type curv --hemi lh

(5)lh.volume
mri_surf2surf --srcsubject OASIS-TRT-20-1 --sval volume --src_type curv --trgsubject fsaverage5 --trgsurfval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/volume --trg_type curv --hemi lh

(6)雅克比度（lh.jacobian_white）
mri_surf2surf --srcsubject OASIS-TRT-20-1 --sval jacobian_white --src_type curv --trgsubject fsaverage5 --trgsurfval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/jacobian_white --trg_type curv --hemi lh

(7)lh.white
mri_surf2surf --s OASIS-TRT-20-1 --hemi lh --sval-tal-xyz white --trgsubject fsaverage5 --tval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/lh.white --tval-xyz $SUBJECTS_DIR/fsaverage5/mri/orig.mgz

(8)lh.annotation
mri_surf2surf --srcsubject OASIS-TRT-20-1 --trgsubject fsaverage5 --hemi lh --sval-annot /home/tj/application/freesurfer/subjects/OASIS-TRT-20-1/label/lh.labels.DKT31.manual.annot --tval /home/tj/application/freesurfer/subjects/min_template/OASIS-TRT-20-1-target/lh.labels.DKT31.manual.annot