R studio运行别人共享的关于差异基因GO富集分析作图的代码,报错如图。检索网页后未找到解决办法,更新R包到最新版后依然报错。请前辈们支招,谢谢!
报错:
Error in has_pairsim(x) :
Term similarity matrix not available. Please use pairwise_termsim function to deal with the results of enrichment analysis.
出错部分:
> for(i in c("BP","CC","MF")){
+ #GO???????
+ kk=enrichGO(gene = gene,OrgDb = org.Hs.eg.db, pvalueCutoff =1, qvalueCutoff = 1, ont=i, readable =T)
+ GO=as.data.frame(kk)
+ GO=GO[(GO$pvalue<pvalueFilter & GO$qvalue<qvalueFilter),]
+ write.table(GO,file=paste0(i,".txt"),sep="\t",quote=F,row.names = F) #???渻????
+ showNum=30
+ if(nrow(GO)<30){
+ showNum=nrow(GO)
+ }
&