bioperl安装

Comand-line Installation

Use the ActiveState ppm-shell:

• Open a cmd window by going to Start >> Run and typing 'cmd' and pressing return.

• Do

C:> ppm-shell
ppm>

• Make sure you have the module PPM-Repositories. Try installing it:

ppm> install PPM-Repositories

• For BioPerl 1.6.1, we require at least the following repositories. You may have some present already.

ppm> repo add http://bioperl.org/DIST
ppm> repo add uwinnipeg
ppm> repo add trouchelle

Because you have installed  PPM-Repositories, PPM will know your Perl version, and select the correct repo from the table above.

• Install BioPerl (not "bioperl").

ppm> install BioPerl

If you are running ActiveState Perl 5.10, you may have a glitch involving SOAP::Lite. Use the following workaround:

• Get the index numbers for your active repositories:

ppm> repo

│ id │ pkgs  │ name                           │
│  1 │ 11431 │ ActiveState Package Repository │
│  2 │    14 │ bioperl.org                    │
│  3 │   291 │ uwinnipeg                      │
│  4 │ 11755 │ trouchelle                     │

• Execute the following commands. (The session here is based on the above table. Substitute the correct index numbers for your situation.)

rem -turn off ActiveState, trouchelle repos
ppm> repo off 1
ppm> repo off 4
rem -to get SOAP-Lite-0.69 from uwinnipeg...
ppm> install SOAP-Lite
rem -turn ActiveState, trouchelle back on...
ppm> repo on 1
ppm> repo on 4
rem -now try...
ppm> install BioPerl