非常恶心的报错,尝试了很久都没有解决,最后重装了 ArchR 就正常运行了
最开始在服务器上安装ArchR也是比较困难的,通过conda勉强安上能用,但是在运行ArchR时需要手动加载很多包,发生这个报错很可能是因为ArchR不能有效调用一些依赖包,或者某些依赖包没有安好
Error in .safelapply(seq_along(allSamples), function(y) { :
Error Found Iteration 1 :
[1] "Error in H5Fopen(file) : HDF5. File accessibility. Unable to open file.\n"
<simpleError in H5Fopen(file): HDF5. File accessibility. Unable to open file.>
Error Found Iteration 2 :
[1] "Error in H5Fopen(file) : HDF5. File accessibility. Unable to open file.\n"
<simpleError in H5Fopen(file): HDF5. File accessibility. Unable to open file.>
Error Found Iteration 3 :
[1] "Error in H5Fopen(file) : HDF5. File accessibility. Unable to open file.\n"
<simpleError in H5Fopen(file): HDF5. File accessibility. Unable to open file.>
In addition: Warning message:
In mclapply(..., mc.cores = threads, mc.preschedule = preschedule) :
3 function calls resulted in an error
Error in .safelapply(seq_along(allSamples), function(y) { :
Error Found Iteration 1 :
[1] "Error in h(simpleError(msg, call)) : \n error in evaluating the argument 'values' in selecting a method for function 'Rle': HDF5. File accessibility. Unable to open file.\n"
<simpleError in h(simpleError(msg, call)): error in evaluating the argument 'values' in selecting a method for function 'Rle': HDF5. File accessibility. Unable to open file.>
Error Found Iteration 2 :
[1] "Error in H5Fopen(file) : HDF5. File accessibility. Unable to open file.\n"
<simpleError in H5Fopen(file): HDF5. File accessibility. Unable to open file.>
Error Found Iteration 4 :
[1] "Error in H5Fopen(file) : HDF5. File accessibility. Unable to open file.\n"
<simpleError in H5Fopen(file): HDF5. File accessibility. Unable to open file.>
In addition: Warning message:
In mclapply(..., mc.cores = threads, mc.preschedule = preschedule) :
3 function calls resulted in an errorError in .safelapply(seq_along(allSamples), function(y) { :
Error Found Iteration 1 :
[1] "Error in H5Fopen(file) : HDF5. File accessibility. Unable to open file.\n"
<simpleError in H5Fopen(file): HDF5. File accessibility. Unable to open file.>
Error Found Iteration 2 :
[1] "Error in H5Fopen(file) : HDF5. File accessibility. Unable to open file.\n"
<simpleError in H5Fopen(file): HDF5. File accessibility. Unable to open file.>
Error Found Iteration 3 :
[1] "Error in H5Fopen(file) : HDF5. File accessibility. Unable to open file.\n"
<simpleError in H5Fopen(file): HDF5. File accessibility. Unable to open file.>
In addition: Warning message:
In mclapply(..., mc.cores = threads, mc.preschedule = preschedule) :
3 function calls resulted in an error