TEtranscripts关于TE的差异分析

1、首先上github链接

GitHub - mhammell-laboratory/TEtranscripts: A package for including transposable elements in differential enrichment analysis of sequencing datasets.

2、解释说明：这个包是A package for including transposable elements in differential enrichment analysis of sequencing datasets.

可以用于RNA-seq的TE差异分析

3、下载安装

git clone https://github.com/mhammell-laboratory/TEtranscripts

cd TEtranscripts python

setup.py install --user

4、准备文件

treatment组的bam文件（bam最好通过star比对完）

control组的bam文件

gene的GTF注释

TE的GTF注释

GTF可以到网站下载