使用anndata打开h5ad

import anndata as ad
import pandas as pd

file2='路径'
adata = ad.read_h5ad(file2)

# 创建 DataFrame 并设置行索引和列索引
X = pd.DataFrame(adata.X)
cell_name = adata.obs.index
chr_name = adata.var.index
X.index = cell_name
X.columns = chr_name

# 转置 DataFrame，使行表示peak，列表示cell
X = X.T

# 将数据保存为.tsv文件
X.to_csv('data/mixscape_hvg_filter.tsv', sep='\t')
# csv文件
X.to_csv('data/mixscape_hvg_filter.csv')