cpan[9]> install CJFIELDS/BioPerl-1.6.924.tar.gz
Running make for C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz
Fetching with LWP:
http://www.perl.com/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz
Checksum for /root/.cpan/sources/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz ok
CPAN.pm: Building C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz
Checking prerequisites...
recommends:
* Algorithm::Munkres is not installed
* Array::Compare is not installed
* Bio::Phylo is not installed
* Clone is not installed
* Convert::Binary::C is not installed
* GD is not installed
* GraphViz is not installed
* HTML::TableExtract is not installed
* PostScript::TextBlock is not installed
* SOAP::Lite is not installed
* SVG is not installed
* SVG::Graph is not installed
* Sort::Naturally is not installed
* Spreadsheet::ParseExcel is not installed
* XML::DOM::XPath is not installed
Checking optional features...
EntrezGene............disabled
requires:
! Bio::ASN1::EntrezGene is not installed
Pg Tests..............disabled
requires:
! DBD::Pg is not installed
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
Do you want to run the Bio::DB::GFF or Bio::DB::SeqFeature::Store live database tests? y/n [n] y
Which database driver should be used? [S]QLite [m]ysql [S]
Which database should I use for testing the SQLite driver?
This database should already be present but doesn't have to be preloaded for any schema [test]
On which host is database 'test' running (hostname, ip address or host:port) [localhost]
User name for connecting to database 'test'? [undef]
Password for connecting to database 'test'? [undef]
- will run tests with database driver 'SQLite' and these settings:
Database test
Host localhost
DSN dbi:SQLite:dbname=test
User undef
Password undef
- will not run the BioDBSeqFeature live database tests (requires MySQL or Pg driver)
Install [a]ll BioPerl scripts, [n]one, or choose groups [i]nteractively? [a]
- will install all scripts
Do you want to run tests that require connection to servers across the internet
(likely to cause some failures)? y/n [n] y
- will run internet-requiring tests
Do you want to run tests requiring a valid email address? y/n [n]
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'BioPerl' version '1.006924'
Building BioPerl
CJFIELDS/BioPerl-1.6.924.tar.gz
./Build -- OK
Running Build test
t/Align/AlignStats.t ................... ok
t/Align/AlignUtil.t .................... ok
t/Align/Graphics.t ..................... skipped: The optional module GD (or dependencies thereof) was not installed
t/Align/SimpleAlign.t .................. ok
t/Align/TreeBuild.t .................... ok
t/Align/Utilities.t .................... ok
t/AlignIO/AlignIO.t .................... ok
t/AlignIO/arp.t ........................ ok
t/AlignIO/bl2seq.t ..................... ok
t/AlignIO/clustalw.t ................... ok
t/AlignIO/emboss.t ..................... ok
t/AlignIO/fasta.t ...................... ok
t/AlignIO/largemultifasta.t ............ ok
t/AlignIO/maf.t ........................ ok
t/AlignIO/mase.t ....................... ok
t/AlignIO/mega.t ....................... ok
t/AlignIO/meme.t ....................... ok
t/AlignIO/metafasta.t .................. ok
t/AlignIO/msf.t ........................ ok
t/AlignIO/nexml.t ...................... skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/AlignIO/nexus.t ...................... ok
t/AlignIO/pfam.t ....................... ok
t/AlignIO/phylip.t ..................... ok
t/AlignIO/po.t ......................... ok
t/AlignIO/prodom.t ..................... ok
t/AlignIO/psi.t ........................ ok
t/AlignIO/selex.t ...................... ok
t/AlignIO/stockholm.t .................. ok
t/AlignIO/xmfa.t ....................... ok
t/Alphabet.t ........................... ok
t/Annotation/Annotation.t .............. ok
t/Annotation/AnnotationAdaptor.t ....... ok
t/Assembly/ContigSpectrum.t ............ ok
t/Assembly/IO/bowtie.t ................. skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
t/Assembly/IO/sam.t .................... skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
t/Assembly/core.t ...................... ok
t/Cluster/UniGene.t .................... ok
t/ClusterIO/ClusterIO.t ................ ok
t/ClusterIO/SequenceFamily.t ........... ok
t/ClusterIO/unigene.t .................. ok
t/Coordinate/CoordinateBoundaryTest.t .. ok
t/Coordinate/CoordinateGraph.t ......... ok
t/Coordinate/CoordinateMapper.t ........ ok
t/Coordinate/GeneCoordinateMapper.t .... ok
t/Draw/Pictogram.t ..................... skipped: The optional module SVG (or dependencies thereof) was not installed
t/LiveSeq/Chain.t ...................... ok
t/LiveSeq/LiveSeq.t .................... ok
t/LiveSeq/Mutation.t ................... ok
t/LiveSeq/Mutator.t .................... ok
t/LocalDB/BioDBGFF.t ................... 1/275
You are loading a Bio::DB::GFF database with GFF3 formatted data.
While this will likely work fine, the Bio::DB::GFF schema does not
always faithfully capture the complexity represented in GFF3 files.
Unless you have a specific reason for using Bio::DB::GFF, we suggest
that you use a Bio::DB::SeqFeature::Store database and its corresponding
loader, bp_seqfeature_load.pl.
install CJFIELDS/BioPerl-1.6.924.tar.gz
最新推荐文章于 2021-05-19 22:10:26 发布