install CJFIELDS/BioPerl-1.6.924.tar.gz

cpan[9]> install CJFIELDS/BioPerl-1.6.924.tar.gz
Running make for C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz
Fetching with LWP:
http://www.perl.com/CPAN/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz
Checksum for /root/.cpan/sources/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz ok

  CPAN.pm: Building C/CJ/CJFIELDS/BioPerl-1.6.924.tar.gz

Checking prerequisites...
  recommends:
    *  Algorithm::Munkres is not installed
    *  Array::Compare is not installed
    *  Bio::Phylo is not installed
    *  Clone is not installed
    *  Convert::Binary::C is not installed
    *  GD is not installed
    *  GraphViz is not installed
    *  HTML::TableExtract is not installed
    *  PostScript::TextBlock is not installed
    *  SOAP::Lite is not installed
    *  SVG is not installed
    *  SVG::Graph is not installed
    *  Sort::Naturally is not installed
    *  Spreadsheet::ParseExcel is not installed
    *  XML::DOM::XPath is not installed

Checking optional features...
EntrezGene............disabled
  requires:
    ! Bio::ASN1::EntrezGene is not installed
Pg Tests..............disabled
  requires:
    ! DBD::Pg is not installed

ERRORS/WARNINGS FOUND IN PREREQUISITES.  You may wish to install the versions
of the modules indicated above before proceeding with this installation

Do you want to run the Bio::DB::GFF or Bio::DB::SeqFeature::Store live database tests? y/n [n] y
Which database driver should be used? [S]QLite [m]ysql [S] 
Which database should I use for testing the SQLite driver?
This database should already be present but doesn't have to be preloaded for any schema [test] 
On which host is database 'test' running (hostname, ip address or host:port) [localhost] 
User name for connecting to database 'test'? [undef] 
Password for connecting to database 'test'? [undef] 
  - will run tests with database driver 'SQLite' and these settings:
    Database test
    Host     localhost
    DSN      dbi:SQLite:dbname=test
    User     undef
    Password undef
  - will not run the BioDBSeqFeature live database tests (requires MySQL or Pg driver)

Install [a]ll BioPerl scripts, [n]one, or choose groups [i]nteractively? [a] 
  - will install all scripts

Do you want to run tests that require connection to servers across the internet
(likely to cause some failures)? y/n [n] y
  - will run internet-requiring tests
Do you want to run tests requiring a valid email address? y/n [n] 
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'BioPerl' version '1.006924'
Building BioPerl
  CJFIELDS/BioPerl-1.6.924.tar.gz
  ./Build -- OK
Running Build test
t/Align/AlignStats.t ................... ok     
t/Align/AlignUtil.t .................... ok     
t/Align/Graphics.t ..................... skipped: The optional module GD (or dependencies thereof) was not installed
t/Align/SimpleAlign.t .................. ok       
t/Align/TreeBuild.t .................... ok     
t/Align/Utilities.t .................... ok     
t/AlignIO/AlignIO.t .................... ok     
t/AlignIO/arp.t ........................ ok     
t/AlignIO/bl2seq.t ..................... ok   
t/AlignIO/clustalw.t ................... ok   
t/AlignIO/emboss.t ..................... ok     
t/AlignIO/fasta.t ...................... ok     
t/AlignIO/largemultifasta.t ............ ok   
t/AlignIO/maf.t ........................ ok     
t/AlignIO/mase.t ....................... ok   
t/AlignIO/mega.t ....................... ok   
t/AlignIO/meme.t ....................... ok     
t/AlignIO/metafasta.t .................. ok   
t/AlignIO/msf.t ........................ ok   
t/AlignIO/nexml.t ...................... skipped: The optional module Bio::Phylo (or dependencies thereof) was not installed
t/AlignIO/nexus.t ...................... ok     
t/AlignIO/pfam.t ....................... ok   
t/AlignIO/phylip.t ..................... ok     
t/AlignIO/po.t ......................... ok     
t/AlignIO/prodom.t ..................... ok   
t/AlignIO/psi.t ........................ ok   
t/AlignIO/selex.t ...................... ok   
t/AlignIO/stockholm.t .................. ok     
t/AlignIO/xmfa.t ....................... ok     
t/Alphabet.t ........................... ok       
t/Annotation/Annotation.t .............. ok       
t/Annotation/AnnotationAdaptor.t ....... ok     
t/Assembly/ContigSpectrum.t ............ ok       
t/Assembly/IO/bowtie.t ................. skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
t/Assembly/IO/sam.t .................... skipped: The optional module Bio::DB::Sam (or dependencies thereof) was not installed
t/Assembly/core.t ...................... ok       
t/Cluster/UniGene.t .................... ok   
t/ClusterIO/ClusterIO.t ................ ok     
t/ClusterIO/SequenceFamily.t ........... ok     
t/ClusterIO/unigene.t .................. ok     
t/Coordinate/CoordinateBoundaryTest.t .. ok       
t/Coordinate/CoordinateGraph.t ......... ok   
t/Coordinate/CoordinateMapper.t ........ ok       
t/Coordinate/GeneCoordinateMapper.t .... ok       
t/Draw/Pictogram.t ..................... skipped: The optional module SVG (or dependencies thereof) was not installed
t/LiveSeq/Chain.t ...................... ok     
t/LiveSeq/LiveSeq.t .................... ok     
t/LiveSeq/Mutation.t ................... ok     
t/LiveSeq/Mutator.t .................... ok     
t/LocalDB/BioDBGFF.t ................... 1/275 
You are loading a Bio::DB::GFF database with GFF3 formatted data.
While this will likely work fine, the Bio::DB::GFF schema does not
always faithfully capture the complexity represented in GFF3 files.
Unless you have a specific reason for using Bio::DB::GFF, we suggest
that you use a Bio::DB::SeqFeature::Store database and its corresponding
loader, bp_seqfeature_load.pl.

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