非root安装Augustus报错解决

多想和从前一样

于 2024-09-23 16:41:32 发布

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文章标签：生信软件安装

本文链接：https://blog.csdn.net/m0_65788436/article/details/142393297

版权

git clone https://github.com/Gaius-Augustus/Augustus.git
cd Augustus
make augustus

报错：

解决：

wget -O boost_1_76_0.tar.gz https://sourceforge.net/projects/boost/files/boost/1.76.0/boost_1_76_0.tar.gz/download

tar xzf boost_1_76_0.tar.gz

cd /hpcfile/users/NLRAnnotation2/boost_1_76_0

./bootstrap.sh --prefix=/hpcfile/users/NLRAnnotation2/boost_1_76_0/boost_install --with-libraries=all

./b2 install --prefix=/hpcfile/users/NLRAnnotation2/boost_1_76_0/boost_install


#将下面的内容添加到common.mk
INCLUDE_PATH_BOOST := -I/hpcfile/users/NLRAnnotation2/boost_1_76_0/boost_install/include
LIBRARY_PATH_BOOST := -L/hpcfile/users/NLRAnnotation2/boost_1_76_0/boost_install/lib -Wl,-rpath,/hpcfile/users/dap/NLRAnnotation2/boost_1_76_0/boost_install/lib

报错：

解决：

报错：

解决：

mkdir -p /hpcfile/users/NLRAnnotation2/sqlite3

cd /hpcfile/users/NLRAnnotation2/sqlite3

wget sqlite-autoconf-3350500.tar.gz https://www.sqlite.org/2021/sqlite-autoconf-3350500.tar.gz

tar zxf sqlite-autoconf-3350500.tar.gz

cd /hpcfile/users/NLRAnnotation2/sqlite3/sqlite-autoconf-3350500

./configure --prefix=/hpcfile/users/NLRAnnotation2/sqlite3/sqlite3_install

make

make install

#将下面的内容添加到common.mk
INCLUDE_PATH_SQLITE := -I/hpcfile/users/NLRAnnotation2/sqlite3/sqlite3_install/include
LIBRARY_PATH_SQLITE := -L/hpcfile/users/NLRAnnotation2/sqlite3/sqlite3_install/lib -Wl,-rpath,/hpcfile/users/NLRAnnotation2/sqlite3/sqlite3_install/lib

报错：

解决：

mkdir /hpcfile/users/NLRAnnotation2/gsl

cd /hpcfile/users/NLRAnnotation2/gsl

wget gsl-latest.tar.gz https://mirror.ibcp.fr/pub/gnu/gsl/gsl-latest.tar.gz

tar zxf gsl-latest.tar.gz

cd /hpcfile/users/NLRAnnotation2/gsl/gsl-2.8/

./configure --prefix=/hpcfile/users/NLRAnnotation2/gsl/gsl_install

make

make install


#将下面的内容添加到common.mk
INCLUDE_PATH_GSL := -I/hpcfile/users/NLRAnnotation2/gsl/gsl_install/include
LIBRARY_PATH_GSL := -L/hpcfile/users/NLRAnnotation2/gsl/gsl_install/lib -Wl,-rpath,/hpcfile/users/NLRAnnotation2/gsl/gsl_install/lib

报错：

解决：

mkdir /hpcfile/users/NLRAnnotation2/lpsolve

cd /hpcfile/users/NLRAnnotation2/lpsolve

wget -O lp_solve_5.5.2.11_source.tar.gz https://sourceforge.net/projects/lpsolve/files/lpsolve/5.5.2.11/lp_solve_5.5.2.11_source.tar.gz/download

tar zxf lp_solve_5.5.2.11_source.tar.gz

cd /hpcfile/users/NLRAnnotation2/lpsolve/lp_solve_5.5

chmod +x ./lpsolve55/ccc ./lp_solve/ccc

cd /hpcfile/users/NLRAnnotation2/lpsolve/lp_solve_5.5/lpsolve55

./ccc

cd /hpcfile/users/NLRAnnotation2/lpsolve/lp_solve_5.5/lp_solve

./ccc

mkdir -p /hpcfile/users/NLRAnnotation2/lpsolve/lpsolve_install/include

cp /hpcfile/users/NLRAnnotation2/lpsolve/lp_solve_5.5/*.h /hpcfile/users/NLRAnnotation2/lpsolve/lpsolve_install/include/

mkdir -p /hpcfile/users/NLRAnnotation2/lpsolve/lpsolve_install/lib

cp /hpcfile/users/NLRAnnotation2/lpsolve/lp_solve_5.5/lpsolve55/bin/ux64/liblpsolve55.* /hpcfile/users/NLRAnnotation2/lpsolve/lpsolve_install/lib/

#将下面的内容添加到common.mk
INCLUDE_PATH_LPSOLVE := -I/hpcfile/users/NLRAnnotation2/lpsolve/lpsolve_install/include
LIBRARY_PATH_LPSOLVE := -L/hpcfile/users/NLRAnnotation2/lpsolve/lpsolve_install/lib -Wl,-rpath,/hpcfile/users/NLRAnnotation2/lpsolve/lpsolve_install/lib

报错：

解决：

git clone https://github.com/DrTimothyAldenDavis/SuiteSparse.git

cd SuiteSparse

INSTALL_DIR=/hpcfile/users/NLRAnnotation2/suitesparse/suitesparse_install

mkdir -p SuiteSparse_config/build

cd ./SuiteSparse_config/build

cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR

make

make install

cd /hpcfile/users/NLRAnnotation2/suitesparse/suitesparse/COLAMD

cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR

make

make install

#将下面的内容添加到common.mk
INCLUDE_PATH_SUITESPARSE := -I/hpcfile/users/NLRAnnotation2/suitesparse/suitesparse_install/include
LIBRARY_PATH_SUITESPARSE := -L/hpcfile/users/NLRAnnotation2/suitesparse/suitesparse_install/lib64 -Wl,-rpath,/hpcfile/users/NLRAnnotation2/suitesparse/suitesparse_install/lib64

参考网站：master的Augustus/docs/INSTALL.md ·盖乌斯-奥古斯都/奥古斯都 (github.com)

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