Augustus安装

C++库升级及安装
升级

sudo apt-get update

安装libboost库

sudo apt-get install libboost-all-dev

安装mysql库

sudo apt-get install mysql-server

自行下载mysql++库

tar -zxvf mysql++-3.3.0.tar
cd mysql++-3.3.0
./configure #配置mysql++

这里出现报错

configure: error: Didn't find mysqlclient_r library in '/usr/lib64 /usr/lib /usr/lib64/mysql /usr/lib/mysql /usr/lib64/mariadb /usr/lib/mariadb /usr/local/lib64 /usr/local/lib /usr/local/lib/mysql /usr/local/mysql/lib /usr/local/mysql/lib/mysql /usr/mysql/lib/mysql /opt/mysql/lib /opt/mysql/lib/mysql /usr/local/lib/mariadb /usr/local/mariadb/lib /usr/local/mariadb/lib/mariadb /usr/mariadb/lib/mariadb /opt/mariadb/lib /opt/mariadb/lib/mariadb /sw/lib /sw/lib/mysql'

检测发现没有安装mariadb-server，libmariadb-dev，libmysqlclient-dev

sudo apt-get install mariadb-server
sudo apt-get install libmariadb-dev
sudo apt-get install libmysqlclient-dev
./configure #重新运行
make
make install 
su 
vim /etc/ld.so.conf #把/usr/local/lib加入文件中，保存并退出。
ldconfig
ln -s /usr/local/lib/libmysqlpp.so /usr/lib/libmysqlpp.so
su ###

下载augustus并解压进入

   cd Augustus-3.5.0

编译出现

../include/sqliteDB.hh:13:10: fatal error: sqlite3.h: No such file or directory
   13 | #include <sqlite3.h>

sudo apt-get install libsqlite3-dev

再一次编译出现

parser/../../include/contTimeMC.hh:18:10: fatal error: gsl/gsl_matrix.h: No such file or directory
18 | #include <gsl/gsl_matrix.h>

sudo apt-get install libgsl-dev

再编译 

alignment.cc:16:10: fatal error: lp_lib.h: No such file or directory
   16 | #include "lp_lib.h"

sudo apt-get install glpk-dev
sudo apt-get install lp-solve
sudo apt-get install lp-solve liblpsolve55-dev

再一次编译出现

bam2wig.c:12:10: fatal error: bgzf.h: No such file or directory
   12 | #include "bgzf.h"

sudo apt-get install libhts-dev

编译完成后

bin/augustus #测试运行，出现完整的使用说明则安装成功

编译附属程序，配置环境变量，安装结束。

make auxprogs #编译附属软件

export PATH=~/software/Augustus-3.5.0/bin:~/software/Augustus-3.5.0/scripts:$PATH #配置环境变量