IORegistryError: No method registered for writing ＜class ‘jaxlib.xla_extension.ArrayImpl’＞ into ＜cla

IORegistryError: No method registered for writing <class ‘jaxlib.xla_extension.ArrayImpl’> into <class ‘h5py._hl.group.Group’> Error raised while writing key ‘matrix’ of <class ‘h5py._hl.group.Group’> to /obsm

This blog is for recording how I fix this error.

Background

When I computed a matrix by using Moscot, I saved this matrix in Anndata like this:

Anndata.obsm[“matrix”] = Matrix

Error

Then when I tried to save it like this:

Anndata.write(“example.h5ad”)

Then I got this error:

IORegistryError: No method registered for writing <class 'jaxlib.xla_extension.ArrayImpl'> into <class 'h5py._hl.group.Group'> Error raised while writing key 'matrix' of <class 'h5py._hl.group.Group'> to /obsm

How to fix it

My way is easy, just modify the type of the matrix from “jaxlib.xla_extension.ArrayImpl” to “numpy.array” like this:

matrix = numpy.array(matrix)