conda install ensembl-vep vep -V 报错Compress/Zlib.pm

使用conda安装vep

conda install ensembl-vep vep

报错

Compress::Raw::Zlib version 2.201 required--this is only version 2.105 at /xxxx/lib/perl5/site_perl/Compress/Zlib.pm line 11.

BEGIN failed--compilation aborted at /xxxx/lib/perl5/site_perl/Compress/Zlib.pm line 11.

Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.

BEGIN failed--compilation aborted at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/ProteinFunctionPredictionMatrix.pm line 83.

Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.

BEGIN failed--compilation aborted at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm line 74.

Compilation failed in require at /xxxx/share/ensembl-vep-110.0-0/Bio/EnsEMBL/Variation/TranscriptVariation.pm line 68.


报错解决

conda update -c conda-forge perl-compress-raw-zlib

参考:https://github.com/Ensembl/ensembl-vep/issues/1378


再次vep 

vep

#----------------------------------#

# ENSEMBL VARIANT EFFECT PREDICTOR #

#----------------------------------#

Versions:

ensembl-vep : 110.0

Help: dev@ensembl.org , helpdesk@ensembl.org

Twitter: @ensembl

http://www.ensembl.org/info/docs/tools/vep/script/index.html

Usage:

./vep [--cache|--offline|--database] [arguments]

Basic options

=============

--help Display this message and quit

-i | --input_file Input file

-o | --output_file Output file

--force_overwrite Force overwriting of output file

--species [species] Species to use [default: "human"]

--everything Shortcut switch to turn on commonly used options. See web

documentation for details [default: off]

--fork [num_forks] Use forking to improve script runtime

For full option documentation see:

http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html

  • 28
    点赞
  • 19
    收藏
    觉得还不错? 一键收藏
  • 打赏
    打赏
  • 0
    评论
评论
添加红包

请填写红包祝福语或标题

红包个数最小为10个

红包金额最低5元

当前余额3.43前往充值 >
需支付:10.00
成就一亿技术人!
领取后你会自动成为博主和红包主的粉丝 规则
hope_wisdom
发出的红包

打赏作者

qq_21478261

你的鼓励将是我创作的最大动力

¥1 ¥2 ¥4 ¥6 ¥10 ¥20
扫码支付:¥1
获取中
扫码支付

您的余额不足,请更换扫码支付或充值

打赏作者

实付
使用余额支付
点击重新获取
扫码支付
钱包余额 0

抵扣说明:

1.余额是钱包充值的虚拟货币,按照1:1的比例进行支付金额的抵扣。
2.余额无法直接购买下载,可以购买VIP、付费专栏及课程。

余额充值