computeMatrix需要巨大的内存空间来转置

#!/bin/bash

#$ -cwd
#$ -S /bin/bash
#$ -l p=10
source activate rna
cd /data/zhangyong/yyp/yypold/chips/lh724/sam/chenalign

run compute matrix to collect the data needed for plotting

computeMatrix scale-regions -S G1-1_FKDL202583853.bw
G1-2_FKDL202583854.bw
5_8A-2_FKDL202583856.bw
Input_FKDL202583858.bw
-R /data/zhangyong/yyp/yypold/hic/mm10.tss.bed /data/zhangyong/yyp/yypold/hic/mm10.tss.bed
–beforeRegionStartLength 3000
–regionBodyLength 5000
–afterRegionStartLength 3000
–skipZeros -o matrix.mat.gz

plotHeatmap -m matrix.mat.gz
-out ExampleHeatmap1.png\