报错记录：cellchat netEmbedding函数

 运行cellchat时报错：

cellchat1 <- netEmbedding(cellchat1, type = "functional")
Manifold learning of the signaling networks for a single dataset 
Error in runUMAP(Similarity, min_dist = min_dist, n_neighbors = n_neighbors,  : 
  Cannot find UMAP, please install through pip (e.g. pip install umap-learn or reticulate::py_install(packages = 'umap-learn')).

报错提示需要安装umap-learn，靠reticulate包调用python函数，实现方法：

1. conda中存在独立的r-reticulate环境，没有的话自己创建一个，并且R中调用的路径一致

conda create -n r-reticulate python=3.9

# 查看当前使用的 Python 环境
py_config()

2. r-reticulate环境中安装umap包

conda activate r-reticulate
pip install umap-learn scipy

3. 安装成功即可在R中调用

library(reticulate)
umap <- import("umap")