主配置文件:
<<include colors_fonts_patterns.conf>>
<<include ideogram.conf>>
<<include ticks.conf>>
<image>
<<include etc/image.conf>>
</image>
karyotype = data/karyotype/karyotype.human.txt
chromosomes_units = 1000000
chromosomes_display_default = no
chromosomes = hs1;hs2;hs3
<links>
z = 0
radius = 0.90r
crest = 1
color = vvlgrey
bezier_radius = 0r
bezier_radius_purity = 0.50
thickness = 2
<link>
file = data/5/segdup.txt
<rules>
<rule> #相同染色体1M以内的links不显示
condition = var(intrachr)
condition = abs(var(pos1) - var(pos2)) < 1Mb
show = no
</rule>
<rule> #相同染色体50M以内的格式变化(见第二节内容)
condition = var(intrachr)
condition = abs(var(pos1) - var(pos2)) < 50Mb
bezier_radius = 1.1r
bezier_radius_purity = 0.25
color = dblue_a2
</rule>
<rule>
condition = var(intrachr)
condition = abs(var(pos1) - var(pos2)) < 100Mb
bezier_radius = 0.75r
crest = 2
bezier_radius_purity = 0.25
color = dgreen_a2
</rule>
<rule>
condition = var(intrachr)
show = no
</rule>
<rule>
condition = var(interchr)
condition = ( from(hs2) && var(start1) > 65Mb && var(start1) < 75Mb ) || ( to(hs2) && var(start2) > 65Mb && var(start2) < 75Mb )
z = 60
color = red_a1
thickness = 5
radius = 1r
</rule>
<rule>
condition = max(var(size1),var(size2)) > 40kb
z = 50
color = black
thickness = 5
</rule>
<rule>
condition = max(var(size1),var(size2)) > 10kb
z = 45
color = dgrey
thickness = 4
</rule>
<rule>
condition = max(var(size1),var(size2)) > 5kb
z = 40
color = grey
thickness = 3
</rule>
<rule>
condition = max(var(size1),var(size2)) > 1kb
z = 35
color = lgrey
thickness = 2
</rule>
</rules>
</link>
</links>
<<include etc/housekeeping.conf>>