#引用
##LaTex
@article{LV201613,
title = “A multi-objective heuristic algorithm for gene expression microarray data classification”,
journal = “Expert Systems with Applications”,
volume = “59”,
pages = “13 - 19”,
year = “2016”,
issn = “0957-4174”,
doi = “https://doi.org/10.1016/j.eswa.2016.04.020”,
url = “http://www.sciencedirect.com/science/article/pii/S0957417416301865”,
author = “Jia Lv and Qinke Peng and Xiao Chen and Zhi Sun”,
keywords = “Microarray, Gene selection, Small number of selected genes, Multi-objective, Heuristic algorithm”
}
##Normal
Jia Lv, Qinke Peng, Xiao Chen, Zhi Sun,
A multi-objective heuristic algorithm for gene expression microarray data classification,
Expert Systems with Applications,
Volume 59,
2016,
Pages 13-19,
ISSN 0957-4174,
https://doi.org/10.1016/j.eswa.2016.04.020.
(http://www.sciencedirect.com/science/article/pii/S0957417416301865)
Keywords: Microarray; Gene selection; Small number of selected genes; Multi-objective; Heuristic algorithm
#摘要
Microarray data 微阵列数据
analytic hierarchy process (AHP)
Univariate Marginal Distribution Algorithm
the fewer the selected genes are, the less cost the disease prognosis expert system is.
#主要内容
##1 特征预选择
a filter-based gene ranking algorithm — mRMR:
特征与类之间的相关性(max-relevance 最大相关)
特征之间的冗余度(min-redundancy 最小冗余)
单个特征的性能
为防止丢失在组中表现好的特征,选300个特征
##2 多目标模型
##3 MOEDA
多目标the estimation of distribution algorithm (EDA) — MOEDA
elite individuals ( EIs )
regenerated individuals ( RIs )
probabilistic model:
classification accuracy (ACC)
the number of selected features (NSF)
Higher and fewer rule. (HFR)
ACC绝对比NSF重要
- 根据ACC对个体排序
- 对于相同ACC,根据NSF排序
Forcibly decrease rule. (FDR)
随着演化的进行,计算NSF的上限 —
U
L
l
UL^l
ULl(逐渐降低)
N
L
l
=
q
2
⌊
l
w
⌋
NL^l = \frac{q}{2^{\left\lfloor\frac{l}{w}\right\rfloor}}
NLl=2⌊wl⌋q
l
l
l — 代数
q
q
q — 预选择的特征数目
w
w
w — 常数
每个特征对应一个选择概率
mutation rules — 防止落入局部最优
the elite reserved strategy — 防止最优个体丢失
SVM + the radial basis function (RBF)
SVM-RBF
参数:
c
c
c与
γ
\gamma
γ
同时优化参数与特征
参数计算
p
∈
{
c
,
γ
}
p \in \left\{ c, \gamma \right\}
p∈{c,γ}
max
p
\max_p
maxp — 参数最大值
min
p
\min_p
minp — 参数最小值
d
d
d — 二进制字符串的十进制值
l
p
l_p
lp — 二进制字符串的长度
l
c
=
l
γ
=
25
l_c = l_\gamma = 25
lc=lγ=25
max
c
=
256
\max_c = 256
maxc=256
max
γ
=
16
\max_\gamma = 16
maxγ=16
#4 试验
10-fold cross validation
‘the N best features are always not the best N features’.