Bioinformatics Armory第10题：Read Filtration by Quality

Problem

Poor-quality reads can be filtered out using the FASTQ Quality Filter tool from the FASTX toolkit. A command-line version of FASTX can be downloaded for Linux or MacOS from its website. An online interface for the FASTQ Quality Filter is also available here within the Galaxy web platform.

Given: A quality threshold value , percentage of bases , and set of FASTQ entries.

Return: Number of reads in filtered FASTQ entries

可以使用FASTX工具包中的FASTQ Quality Filter工具过滤掉质量差的读取。可以从其网站下载Linux或MacOS的命令行版本的FASTX 。对于在线界面也可以在这里的内银河网络平台。FASTQ Quality Filter

给定：质量阈值，碱基百分比 ，以及FASTQ条目集。

返回值：过滤的FASTQ条目中的读取次数

Sample Dataset

20 90
@Rosalind_0049_1
GCAGAGACCAGTAGATGTGTTTGCGGACGGTCGGGCTCCATGTGACACAG
+
FD@@;C<AI?4BA:=>C<G=:AE=><A??>764A8B797@A:58:527+,
@Rosalind_0049_2
AATGGGGGGGGGAGACAAAATACGGCTAAGGCAGGGGTCCTTGATGTCAT
+
1<<65:793967<4:92568-34:.>1;2752)24')*15;1,.3*3+*!
@Rosalind_0049_3
ACCCCATACGGCGAGCGTCAGCATCTGATATCCTCTTTCAATCCTAGCTA
+
B:EI>JDB5=>DA?E6B@@CA?C;=;@@C:6D:3=@49;@87;::;;?8+

Sample Output

2