Bioinformatics Armory第8题：Read Quality Distribution

Problem

• A version of FastQC can be downloaded here and run locally on any operating system with a suitable Java Runtime Environment (JRE) installed.

• An online version of FastQC is also available here in the "Andromeda" Galaxy instance.

Given: A quality threshold, along with FASTQ entries for multiple reads.

Return: The number of reads whose average quality is below the threshold.

• 可以在此处下载FastQC版本，并在安装了合适的Java运行时环境（JRE）的任何操作系统上本地运行。

• FastQC的在线版本也可以在这里的“仙女座”星系实例。

给定：质量阈值，以及多次读取的FASTQ条目。

返回值：平均质量低于阈值的读取次数。

Sample Dataset

28
@Rosalind_0041
GGCCGGTCTATTTACGTTCTCACCCGACGTGACGTACGGTCC
+
6.3536354;.151<211/0?::6/-2051)-*"40/.,+%)
@Rosalind_0041
TCGTATGCGTAGCACTTGGTACAGGAAGTGAACATCCAGGAT
+
AH@FGGGJ<GB<<9:GD=D@GG9=?A@DC=;:?>839/4856
@Rosalind_0041
ATTCGGTAATTGGCGTGAATCTGTTCTGACTGATAGAGACAA
+
@DJEJEA?JHJ@8?F?IA3=;8@C95=;=?;>D/:;74792.

Sample Output

1