转载 一路向前_莫问前程_前程似锦
TCGAbiolinks
最新版的TCGA是比对到hg38
基于RNAseq的测序count文件下载
query
# Gene expression aligned against hg38query
query
query = GDCquery(project = "TCGA-COAD", data.category = "Transcriptome Profiling", data.type = "miRNA Expression Quantification") query = GDCquery(project = "TARGET-AML", data.category = "Transcriptome Profiling", data.type = "miRNA Expression Quantification", workflow.type = "BCGSC miRNA Profiling"个性化下载—使用样本类型只获得原发性实体肿瘤样本和正常实体组织
# Using sample type to get only Primary solid Tumor samples and Solid Tissue Normalquery.mirna
# All DNA methylation data for TCGA-GBM and TCGA-GBMquery.met
query.met
# Searching idat file for DNA methylationquery