install tabix/bgzip

最新推荐文章于 2024-05-22 19:44:45 发布

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最新推荐文章于 2024-05-22 19:44:45 发布

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文章标签：操作系统 git python

这篇博客介绍了如何安装bgzip和tabix，这两个工具分别用于块压缩/解压缩和索引TAB分隔的基因组位置文件。内容涉及到SAMtools、BCFtools和HTSlib的关系，以及如何从源代码安装BCFtools和HTSlib以获取这些实用工具。提供了下载链接和安装步骤。

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bgzip – Block compression/decompression utility

tabix – Generic indexer for TAB-delimited genome position files

SAMtools and BCFtools are distributed as individual packages. The code uses HTSlib internally, but these source packages contain their own copies of htslib so they can be built independently.

HTSlib is also distributed as a separate package which can be installed if you are writing your own programs against the HTSlib API. HTSlib also provides the bgzip, htsfile, and tabix utilities, so you may also want to