ANTs安装

医学配准软件ANTs安装Tutorial+避坑指南
官网编译源码教程

#!/bin/bash

antsBuildInstructions="https://github.com/ANTsX/ANTs/wiki/Compiling-ANTs-on-Linux-and-Mac-OS"

echo "
This script will download ANTs, build and install under the current directory. 
Developer tools including compilers, git and cmake must be installed
If you encounter errors, please see the installation instructions at
  $antsBuildInstructions
Build will proceed in 5 seconds
"

sleep 5

workingDir=${PWD}

# Clone the repo
git clone https://github.com/ANTsX/ANTs.git

# If you want to build a particular release, do so here
# cd ANTs
# git checkout v2.3.1
# cd -

# Number of threads used by make
buildThreads=4

# Where to build, should be an empty directory
buildDir=${workingDir}/build
installDir=${workingDir}/install

mkdir $buildDir $installDir

cd $buildDir

# USE_VTK must be turned on to build antsSurf
cmake \
    -DCMAKE_INSTALL_PREFIX=$installDir \
    -DBUILD_SHARED_LIBS=OFF \
    -DUSE_VTK=OFF \
    -DBUILD_TESTING=OFF \
    -DRUN_LONG_TESTS=OFF \
    -DRUN_SHORT_TESTS=OFF \
    ${workingDir}/ANTs 2>&1 | tee cmake.log

if [[ $? -ne 0 ]]; then
  echo "ANTs SuperBuild configuration failed. Please review documentation at
    $antsBuildInstructions
  If opening an issue, please attach
  
  ${buildDir}/cmake.log
  ${buildDir}/CMakeCache.txt
  ${buildDir}/CMakeFiles/CMakeError.log
  ${buildDir}/CMakeFiles/CMakeOutput.log
  
"
  exit 1 
fi

make -j $buildThreads 2>&1 | tee build.log

if [[ ! -f "CMakeFiles/ANTS-complete" ]]; then
  echo "ANTs compilation failed. Please review documentation at
    $antsBuildInstructions
  If opening an issue, please attach
  ${buildDir}/build.log
  ${buildDir}/cmake.log
  ${buildDir}/CMakeCache.txt
  ${buildDir}/CMakeFiles/CMakeError.log
  ${buildDir}/CMakeFiles/CMakeOutput.log
  
"
  exit 1
fi

cd ANTS-build
make install 2>&1 | tee install.log

antsRegExe="${installDir}/bin/antsRegistration"

if [[ ! -f ${antsRegExe} ]]; then
  echo "Installation failed. Please review documentation at
    $antsBuildInstructions
  If opening an issue, please attach
  ${buildDir}/build.log
  ${buildDir}/cmake.log
  ${buildDir}/CMakeCache.txt
  ${buildDir}/ANTS-build/install.log
  ${buildDir}/CMakeFiles/CMakeError.log
  ${buildDir}/CMakeFiles/CMakeOutput.log
"
  exit 1
fi

echo "Installation complete, running ${antsRegExe}"

${antsRegExe} --version

echo "
Binaries and scripts are located in 
  $installDir
Please see post installation instructions at 
  $antsBuildInstructions
"