报错:加载Seurat包时object ‘markvario’ is not exported by ‘namespace:spatstat’

Error: object ‘markvario’ is not exported by ‘namespace:spatstat’

ERROR: lazy loading failed for package ‘Seurat’
在这里插入图片描述
解决方法:

remove.packages(grep("spatstat", installed.packages(), value = T))
.rs.restartR()
devtools::install_version("spatstat", version = "1.64-1")

然后再执行library(“Seurat”)的命令,就可以解决了。

> filter_sample <- function(seurat_obj, sample_id) { + # 提取当前样本子集 + sample_data <- subset(seurat_obj, subset = orig.ident == sample_id) + + # 计算样本特定阈值 + min_feature <- 200 + min_count <- 500 + + # 应用筛选条件 + filtered <- subset(sample_data, + nFeature_RNA > min_feature & + nCount_RNA > min_count) + + # 返回筛选后的样本对象 + return(filtered) + } > # 初始化结果列表 > filtered_samples <- list() > # 循环处理每个样本 > for (sample in samples) { + cat("Processing sample:", sample, "\n") + filtered_samples[[sample]] <- filter_sample(PDAC_Updated, sample) + } Processing sample: IU_PDA_HM9 Error in `FetchData()`: ! None of the requested variables were found: Run `rlang::last_trace()` to see where the error occurred. Called from: signal_abort(cnd, .file) 共有30个警告 (用warnings()来显示) Browse[1]> warnings() 警告信息: 1: Not validating Seurat objects 2: Not validating Seurat objects 3: Not validating Seurat objects 4: Not validating Seurat objects 5: Not validating Seurat objects 6: Not validating Seurat objects 7: Not validating Seurat objects 8: Not validating Seurat objects 9: Not validating Seurat objects 10: Not validating Seurat objects 11: Not validating Seurat objects 12: Not validating Seurat objects 13: Not validating Seurat objects 14: Not validating Seurat objects 15: Not validating Seurat objects 16: Not validating Seurat objects 17: Not validating Seurat objects 18: Not validating Seurat objects 19: Not validating Seurat objects 20: Not validating Seurat objects 21: Not validating Seurat objects 22: Not validating Seurat objects 23: Not validating Seurat objects 24: Not validating Seurat objects 25: Not validating Seurat objects 26: Not validating Seurat objects 27: Not validating Seurat objects 28: Not validating Seurat objects 29: Not validating Seurat objects 30: Not validating Seurat objects
最新发布
09-06
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