CIRCOS教程翻译 5.4——Rule

接下来的5节内容为links的规则演示，主配置文件：

<<include colors_fonts_patterns.conf>>

<<include ideogram.conf>>
<<include ticks.conf>>

<image>
<<include etc/image.conf>>
</image>

karyotype   = data/karyotype/karyotype.human.txt

chromosomes_units = 1000000
chromosomes       = hs1;hs2;hs3
chromosomes_display_default = no

<links>

radius    = 0.975r
crest     = 0.5
thickness = 2
color     = black
bezier_radius        = 0r
bezier_radius_purity = 0.5

<link>

file       = data/5/segdup.txt

<rules> #rule的规则：如果没有flow，且第一个rule成功，后面的所有rule都不会执行
<rule>
condition  = var(intrachr) #如果links终止在相同的染色体上，返回1则（不显示）；interchr如果links终止在不同的染色体上，返回1
show       = no
</rule>
<rule>
condition  = between(hs1,hs2) #染色体1和2之间的links为绿色，continue继续下个rule
color      = green
z          = 10
flow       = continue
</rule>
<rule>
condition  = between(hs2,hs3) #染色体1和2之间的links为蓝色
color      = blue
thickness  = 2
z          = 15
</rule>
</rules>

</link>

</links>

<<include etc/housekeeping.conf>>