linux (在linux运行R遇到的问题)

1.运行R显示"biobase"未安装
R语言安装并使用Biobase包:

install.packages("BiocInstaller", repos="https://bioconductor.org/packages/3.6/bioc")
BiocInstaller::biocLite("Biobase")

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2.运行"library(NMF)“报错，提示运行"install.extras(NMF)”
直接运行"install.extras(NMF)"行不通，显示各种错误，例如

Error in contrib.url(repos, "source") :
  trying to use CRAN without setting a mirror
Calls: install.packages -> contrib.url
Execution halted

首先怀疑是"install.extras"所在包的问题，运行如下Biomanager行不通：

BiocManager::install("packageExtra")# install the package only once
# 根本就没有这个包？？
library(packageExtra)# load the package every new R session

最后发现只需要在R脚本里更新一步：

install.packages('NMF', repos = "http://cran.us.r-project.org")

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3.运行NMF的R脚本发现迭代1000次报错：

OpenBLAS blas_thread_init: pthread_create failed for thread 127 of 128: Resource temporarily unavailable
OpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 4118090 max

疯了已经。。。
Python创建大量线程时遇上OpenBLAS blas_thread_init报错怎么办？

export OPENBLAS_NUM_THREADS=8

一步就解决了，我哭了

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4.在linux上安装R包的5种方法