Gene Regulatory Network
文章平均质量分 59
SCENIC
DerekRusso
A med student, interseted in bioinformatics. I believe in clean code and artistic research.
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【hdWGCNA】high dimensional WGCNA analysis for single cell datasets
high dimensional WGCNA analysis for single cell datasets (multiple conditions and samples avaliable)原创 2022-10-11 10:49:07 · 816 阅读 · 0 评论 -
【DoRothEA】inferring TF-target activity using mRNA expression
DoRothEA实质上是tf-target gene的数据库,证据来源有实验文献、推测等,A (highest confidence) to E (lowest confidence) 。Regulon的概念是,某个TF调控的genes的集合。DoRothEA通常用VIPER这种统计方法.DoRothEA既可以用于bulk也可以用于单细胞。if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("Bioc原创 2022-04-26 10:01:01 · 647 阅读 · 0 评论 -
【SCENIC】Single Cell rEgulatory Network Inference and Clustering
SCENIC的R语言实现原创 2022-04-16 16:29:56 · 1467 阅读 · 0 评论